Pseudomonas sp. 31-12: DJ564_00265
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Entry
DJ564_00265 CDS
T11624
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz02025
Biofilm formation - Pseudomonas aeruginosa
pssz03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
DJ564_00265 (icmF)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
DJ564_00265 (icmF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pssz02044
]
DJ564_00265 (icmF)
Secretion system [BR:
pssz02044
]
Type VI secretion system
Imp/Vas secretion system core components
DJ564_00265 (icmF)
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Ortholog
Paralog
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
AAA_29
SRC-1
RsgA_GTPase
DUF4131
Motif
Other DBs
NCBI-ProteinID:
AWM89337
LinkDB
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Position
complement(51662..55201)
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AA seq
1179 aa
AA seq
DB search
MKKFFKKVGAFLRKTWVWTLLVVLFLALLVWFVGPLLAVDDYKFWEGSTSRLLTISVLFL
IWGLTMVFVSWRAGVRKKAIEDTEDGQDRIRREELIDEEQKELRVRFKDALKTLKTSSLY
RGRSERWRSDLPWYLLIGPQGSGKTSLLDFSGLEFPINKIDRKLTRDTLGTRHCDWYFAD
HGVLIDTAGRYLTQPDAEVDGSAWSTLLDLLRKRRRNRPLNGVLVTIPVELLLGNTEQDL
DTLARQVRARLQDVHQKLHVDVPVYLVLSKADKLLGFDEFFDQLTREESDQVLGTSFRKE
QSGTDVAVLRAEFEELLRRLNSQVIMRMHQERDTQRRGRILDFPHQLGQIGERLCLFVDM
AFTGNRYQRVSQLRGFYLTSAPHLTQEMDQTTAGIGASLGMSAGMLPTLRSGRSRFIHHL
LSRVIFPEADLAGLDKRERSRIHWGQRALYVGALAALALFGMLWAGGFSANYERLENLRN
LATNWTQERSALTARDDSMAVLKPLDSSYAATQVFPKKGDVSYHERGGLFQGEEVNPVVK
DAYERELEAQLLPKVATLLEAQIRANMKDRERLLNSLRAYLMLNMKDRRDGPWLKDWVAT
EWSQRYAGNTAVQNGLNTHFERLLKQPFIYPLNDQLVAQARQVLRSESLANVVYRMLREQ
ARNLPEYRLSQHMGPQASLFVGTDYVIPGFYTQQGYQQYFSVQGSALVTDILRDNWVLGE
GTGISGMDLRRLMVELEQLYFRDYANFWSEAVGQVALPPINDAGEGAEQLAGLTSANSPV
LQLLVEVRENTRFPADAEPADQAADAAGALADQKGKLGKIGKLASAAADQASEMAAMKNL
PDTAKKSLQRRFEPLHRLLDDNNGPAADLTPALAALNDLQLQLASLARASSPDQAAFEMA
KTRMSGQRDALSALRNASNRLPRPVSVWFNVLAEDTWRLVLNDSYQYLNQRYQSELYSFY
GKAINKRYPFSAHSTSDVAISDFREFFKAQGINDRFFETYMRPFVSGDPGNYRLRSIDGH
SMPISKVYLDQMAAAQVIRQSFFSVNPAEPQVQFKLEPYTLDPAVSRSEFKFGDKTIEYR
HGPIVPVSFKWPTDAEDGRTSLVLDKMAGRPIGIEKNTGPWSLFRLFDLMQTEYLNGRDV
MVLKADVGGLRANYLLSSQRTPNPFDMGVLRTFRMPVQL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtttttcaagaaagtcggcgcattcttgcgcaagacctgggtctggaccttg
ctggtggtgctgtttctggcgctgctggtgtggttcgtcgggccgctgctggcggtggat
gactacaagttctgggaaggttcgacctcccgtctgctgaccatcagtgtgctgttcctg
atctggggcctgaccatggtcttcgtcagctggcgcgcgggcgtacgcaagaaagccatt
gaagacacggaagacggccaggatcgtattcgccgtgaagagctgatcgacgaagagcag
aaagagcttcgtgtgcgcttcaaggatgcgttgaaaaccctgaagacctcgagcctgtat
cgcggtcgcagcgaacgctggcgcagtgatttgccgtggtacttgctgatcggcccgcag
ggcagcggcaagaccagcctgctggacttctcgggccttgagtttccgatcaacaagatc
gaccgcaaactgacccgggacaccctcggcacccgtcattgcgactggtatttcgccgac
cacggtgtgctgatcgacaccgccgggcgttacctgacccagccggatgccgaagtcgat
ggcagtgcctggagcaccttgctcgacctgctgcgcaagcgtcgccgcaaccgtccgttg
aacggcgtgctggtgaccatcccggttgaattactgctgggcaacaccgagcaggacctc
gacaccctggctcgccaggtgcgtgcgcgtctgcaagacgtgcatcagaaactgcacgtt
gatgtgccggtttatctggtgctgagcaaggcggacaagctgctcggtttcgacgagttc
ttcgatcagcttacccgcgaagaaagcgatcaggtgcttggcaccagcttccgtaaagag
cagagcggcaccgacgtcgccgtcctgcgcgccgagttcgaagagctgctgcgtcgcctg
aacagccaggtgatcatgcgcatgcaccaggagcgcgacacccagcgccgtggtcgcatt
ctcgacttcccgcatcaactggggcagatcggcgagcgcctgtgcctgttcgtcgacatg
gcgttcaccggcaaccgctaccagcgtgtcagccagttgcgcggtttctacctgaccagc
gcaccgcacctgactcaagagatggaccagaccaccgccggcatcggcgcgagcctgggc
atgagcgccggcatgctgccgaccttgcgcagtggccgttcgcggttcattcaccatttg
ctcagtcgggtgattttccccgaggccgacctggccggtctggacaagcgcgaacgcagc
cgcatccattggggccaacgtgcgctgtacgtgggcgcactggcggcactggcgctgttc
ggcatgctctgggcgggcggtttctccgccaactacgagcgtctggaaaacctgcgcaac
ctggccaccaactggactcaagagcgctcggccctgaccgcacgcgatgattccatggcg
gtgctcaaaccgctcgatagcagttacgcggcgacccaggtcttcccgaaaaaaggtgat
gtgtcgtaccacgaacgtggcggcctgttccaaggtgaagaggtcaacccggtggtcaag
gacgcctacgagcgtgagcttgaagcgcaactgctgccgaaggtcgcgaccctgctggaa
gcgcagatccgcgccaacatgaaggaccgcgagcgcctgctcaacagcctgcgcgcgtac
ctgatgttgaacatgaaggatcgtcgcgacgggccgtggctcaaggattgggtcgccacc
gagtggtcccagcgctacgccggcaacaccgcggtgcagaacggtttgaacacgcacttc
gagcgtttgctcaagcagccgtttatctacccgctgaacgatcaactggtggcgcaagcg
cgtcaggtgctgcgcagcgaatcgctggccaacgtggtttaccggatgctgcgcgagcag
gctcgcaacctgccggaataccgtttgagccaacacatggggccgcaggcttcactgttt
gtcggcaccgattacgtgatcccgggcttctacacccaacagggttatcagcagtatttc
tcggtccagggcagtgcgctggtcaccgatatcctgcgtgacaactgggtgctgggcgaa
ggcacgggcatcagcggcatggacttgcgtcgcctgatggtcgaactggagcaactgtac
ttccgcgactacgccaacttctggagtgaagcggtcggccaggtggccttgccaccgatc
aacgatgcgggcgagggcgccgagcaactggcgggcctgacttctgccaattccccggtg
ctgcaactgctggtggaagtgcgcgagaatacccggttcccggcagacgccgaaccggct
gatcaagcggctgatgccgctggcgcactggccgatcagaaaggcaagttgggcaaaatc
ggcaaactggcgtcggccgcagcggaccaggcttcggaaatggcggcgatgaaaaacctg
ccggacaccgcgaagaaatcactgcaacgtcgcttcgaaccgctgcaccgtttgctggat
gacaacaacggcccggccgctgatctgaccccggcactcgcggcgctcaacgacctgcaa
ctgcaactggcgagcctggcgcgtgccagttccccggatcaggccgcgttcgaaatggcc
aagacccgcatgagcggccagcgtgatgcgctgagcgccctgcgcaatgcctccaatcgc
ctgccgcgtccggtgagcgtgtggttcaacgtgttggccgaagacacctggcgtctggtg
ctcaacgattcctaccagtacctgaaccagcgttatcagagcgagctgtacagcttctat
ggcaaggcgatcaacaagcgttacccgttcagcgcccacagcaccagcgacgtcgcgatc
agcgatttccgcgagttctttaaggcgcagggcatcaacgatcgcttcttcgagacctac
atgcgtccgttcgtcagtggcgacccaggtaactaccgcctgcgcagcatcgacggtcac
agcatgccgatctccaaggtctacctcgaccagatggccgcggcccaagtgatccgccag
agcttcttctcggtcaacccggccgagccgcaagtgcagttcaaactggagccgtacacc
ctcgacccggccgtcagccgttccgagttcaagtttggcgacaagaccatcgaataccgc
cacggcccgatcgtgccggtgtcgttcaaatggccgaccgacgctgaagacggacgcacc
agcctggtcctcgacaaaatggccggccgcccgatcggtatcgaaaagaacaccggccca
tggtcgctgttccgcttgttcgacctgatgcagaccgaatacctgaacggtcgcgacgtc
atggtgctcaaggcggacgtgggcggcctgcgcgcaaattacctgctcagcagccagcgc
acgccgaacccgttcgacatgggcgtgctgcgcaccttccgtatgccggtgcagctctga
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