Pseudomonas sp. 31-12: DJ564_01340
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Entry
DJ564_01340 CDS
T11624
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03030
DNA replication
pssz03410
Base excision repair
pssz03420
Nucleotide excision repair
pssz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DJ564_01340
03410 Base excision repair
DJ564_01340
03420 Nucleotide excision repair
DJ564_01340
03440 Homologous recombination
DJ564_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pssz03032
]
DJ564_01340
03400 DNA repair and recombination proteins [BR:
pssz03400
]
DJ564_01340
Enzymes [BR:
pssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DJ564_01340
DNA replication proteins [BR:
pssz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DJ564_01340
DNA repair and recombination proteins [BR:
pssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DJ564_01340
NER (nucleotide excision repair)
GGR (global genome repair) factors
DJ564_01340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
SDA1_dom
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AWM89540
LinkDB
All DBs
Position
complement(288735..291506)
Genome browser
AA seq
923 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVDGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKIDVPLDIGLDDLQMGRPDHDKLAELYTLLEFKSWFDENQRDAKRSGQEV
TAPVAEEAAVETELKYTTILTQADFDLWLKKLNDATLIAFDTETTGIDAQQAQLVGLSFA
VQANEAAYIPLTHSYMGVPDQLDRDTVLRALKPILEDPNKLKVGQHAKFDMNILANCAIG
GDQSCGITVQGIAFDTMLESYVLDSTATRHDMDSLALKYLNHTTTSFQDIAGKGAKQLTF
DQISLELAGPYAAEDADVTLRLHQTLQEKLNAIPSLSKVLSEIEMPLVPVLARIERQGAL
VDANLLGIQSVELGDKMVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPILSKTAKGQ
ASTAEAVLAELAEQDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA
TGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLH
AFRNDLDVHKATAAEVFGVELADVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQ
AYIDRYFARYPGVLEYMERTRTQAAEQGFVETIFGRRLYLPEINAKNPALRKGAERTAIN
APMQGTAADIIKKAMVAVDNWLTSSGLDAKVILQVHDELVLEVREDLVDQVRDEIRAHMS
NAVKLDVPLLVEVGVGNNWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcttacctgtaccgcgcctttcac
gccctgccgccgctgaccacttccaagggtctgccgaccggagcggtcaaaggcgtgctg
aacatgctcaagagtctgcgcaagcagtacccggacagtccgttcgccgtggtgttcgac
gccaagggtgggacttttcgcgatgacatgtacgccgaatacaaggccaaccgtccgagc
atgccggatgacatgcgcgtgcagatcgaacccctgcaccagagcgtgatcgccctcggc
ttcccgctgctgtgcgtcgaaggcgtcgaggccgatgacgtgatcggcactttggcccgc
agcagcgccgcggctgaccgcccggtggtgatctccaccggcgacaaagacatggcgcaa
ctggtcgacggccacattaccttggtcaataccatgaccggtagcgcgctggacgtggac
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattacctggcactgatg
ggcgattcttccgacaacattccgggcgttccgggtattggtccgaagaccgcttccggt
ctgctggtcggcgtgaacggtggcctgaccgagctgtatgcacagctcgacatcgtcccg
accttgccgattcgtggcgccaagaccctgccggccaagctcgaagagcacaaggagatg
gcgttcctctcctatcagttggcgaccatcaagatcgacgtgccgctggacatcgggctc
gacgacctgcaaatgggccggccggatcacgacaaactcgccgagctctacaccctgctg
gaattcaagagctggttcgacgagaaccagcgcgatgccaagcgttcgggccaggaagtc
acagcgccggtggctgaagaagccgctgtcgagaccgaactcaagtacaccacgatcctc
acccaggccgatttcgacctgtggctgaagaagctcaacgacgccacgctgattgccttc
gataccgagacgaccggtatcgacgcgcagcaggcgcaattggtcggtctgtcgtttgct
gtacaagccaacgaagcggcctacatcccgctgacccattcctacatgggcgtgccggat
cagctcgatcgcgacaccgtgctgcgcgcactgaaaccgattctggaggacccgaacaaa
ctcaaggtcggccagcacgccaagttcgacatgaacatcctggccaactgcgccatcggt
ggcgaccaaagctgcggcatcaccgtgcaaggcatcgcgttcgacaccatgctcgaatcc
tacgtgctggactccaccgcgacccgccacgacatggacagcctggcgctcaagtacctg
aatcacaccaccaccagcttccaggacatcgccggcaagggcgccaagcagctgaccttt
gaccagatatccctggaactggccgggccttacgccgccgaagacgccgacgtaacgctg
cgcctgcaccaaaccttgcaagaaaagctcaatgccatcccgagcctgagcaaagtcctg
agcgaaatcgaaatgccgctggtgccggtactcgcccgtatcgaacgccagggcgcgttg
gtcgatgccaacctgctgggcattcaaagcgtcgagctgggcgacaaaatggtcgcgctg
gagcgggaggcattcgccatcgccggcgaggaattcaacctcggttcgccgaagcaattg
ggcgtgattctgtacgaaaaactcggcctgccgatcctcagcaaaaccgccaaaggccag
gcgtccaccgccgaagccgtcctcgcggaactcgccgagcaggattacccgctgcccaaa
gtgctgatgcagtaccgctcgatgagcaagctgaaaagcacttacaccgatcgcctgccg
gagcagatcaacccgcgtaccgggcggattcacacgtcttatcatcaagctgtcgcggca
accgggcgtttgtcctccagcgatccgaacttgcagaacattccgatccgcactgccgaa
gggcgtcggattcgtcaggcgttcgtcgcacctaaaggctacaaactgctggccgcggac
tattcgcaaatcgaactgcggatcatggcgcacctggccaaggatgaagggttgctgcac
gcattccgcaatgacctggacgtgcacaaagccaccgccgccgaagtgttcggcgtagaa
ctggccgacgtcaccaccgaccagcgtcgcagcgccaaggcgatcaacttcggtttgatc
tacggcatgagcgcgtttgggctggccaagcagatcggcgttgatcgcaagcaatcccag
gcttacatcgatcgttatttcgcccgctacccgggtgttctggaatacatggaacgcacc
cgcacccaggcggccgagcaaggttttgtcgagacgattttcggacgtcgcctgtacctg
ccggaaatcaacgcgaaaaacccggccctgcgtaaaggtgccgaacgcacggcaatcaac
gcgccgatgcaaggcacggccgcggacatcatcaagaaagccatggtggcggtggataac
tggctgacttcctcgggcctcgacgccaaagtcatcctgcaggtgcacgatgaattggtg
cttgaggtacgtgaagatctggtcgaccaagttcgcgatgaaattcgtgcgcacatgagc
aacgccgtgaagctggatgtaccgcttctggtcgaggttggcgtaggcaataactgggat
gaggctcactga
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