Pseudomonas sp. 31-12: DJ564_02350
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Entry
DJ564_02350 CDS
T11624
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz00521
Streptomycin biosynthesis
pssz00523
Polyketide sugar unit biosynthesis
pssz00525
Acarbose and validamycin biosynthesis
pssz00541
Biosynthesis of various nucleotide sugars
pssz01100
Metabolic pathways
pssz01110
Biosynthesis of secondary metabolites
pssz01250
Biosynthesis of nucleotide sugars
Module
pssz_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
DJ564_02350 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
DJ564_02350 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
DJ564_02350 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
DJ564_02350 (rfbB)
00525 Acarbose and validamycin biosynthesis
DJ564_02350 (rfbB)
Enzymes [BR:
pssz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
DJ564_02350 (rfbB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
AWM89725
LinkDB
All DBs
Position
complement(504548..505630)
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AA seq
360 aa
AA seq
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MRILITGGAGFIGSALIRYLIRHTEHEVLNLDKLTYAGNLESLTSIATDTRYEFVQADIV
DQATVSAVLARFQPQAIMHLAAESHVDRSIDGPSDFIQTNIVGTYSLLDATRAYWQTLAE
PEKSAFRFHHISTDEVYGDLHGVDDLFTETTPYAPSSPYSASKAASDHLVRAWQRTYGLP
VLLTNCSNNYGPFHFPEKLIPLVILNALAGKPLPVYGNGLQVRDWLFVEDHARALLKVVT
EGVVGETYNIGGHNEQKNIDVVRGICALLEELAPNKPEGVAHFADLITFVQDRPGHDLRY
AIDASKIERELGWVPEETFETGLRKTVQWYLDNLEWCRRVQDGSYQGERLGAINTKELLA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcgtattctcatcaccggcggtgccggtttcattggctctgccctgattcgctacctg
attcggcacactgagcatgaagtgctcaacctggacaaactgacctacgctggcaatctc
gagtcgctgaccagcattgccaccgacacccgctacgagttcgtccaggccgatatcgtc
gaccaggccaccgtgagcgcggtactggcacgcttccagccgcaggcgatcatgcacctg
gcggcagaatcccacgtcgaccgttccattgacggtccgtcggatttcatccagaccaat
atcgtcggcacctacagcctgctggatgccacccgcgcctactggcagacgctggccgag
ccggaaaaaagcgccttccgcttccatcacatctctactgatgaggtctacggcgacctg
cacggcgtcgatgatctgttcaccgaaaccacgccctacgcaccgagctcgccgtactcc
gcgagcaaagcggcgtccgaccatctggtccgcgcctggcagcgcacctacggcctgccg
gtattgctgaccaattgctcgaacaactacgggccgttccacttcccggaaaaactgatt
ccgctggtgatcctcaacgccttggccggcaagcctttgcctgtttacggtaacggcctg
caagtacgcgactggctgtttgtcgaagatcacgcccgggcgctgctcaaagtggtcacc
gaaggcgtggtcggcgagacctacaacattggcggtcacaacgaacagaagaacatcgac
gtggtgcgtggcatctgcgcgctgcttgaagaactggcgccgaacaagcctgaaggcgtg
gcgcacttcgccgacctcattaccttcgtccaggaccgtccgggtcacgacctgcgctac
gccatcgacgcgagcaagatcgaacgcgaactgggctgggtgccggaagaaaccttcgaa
accggcctgcgcaaaaccgtccagtggtatctggataacctggagtggtgccgccgcgtt
caggacggcagctatcagggcgaacgcctgggcgccatcaataccaaggagctgctcgca
tga
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