Pseudomonas sp. 31-12: DJ564_21125
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Entry
DJ564_21125 CDS
T11624
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pssz Pseudomonas sp. 31-12
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pssz03016
]
DJ564_21125
Enzymes [BR:
pssz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DJ564_21125
Transfer RNA biogenesis [BR:
pssz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DJ564_21125
Prokaryotic type
tRNA splicing ligases
DJ564_21125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWM95228
LinkDB
All DBs
Position
complement(4471940..4473166)
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AA seq
408 aa
AA seq
DB search
MQKQSYQLLEVAHGKPIKLWTEGVPVESEARQQLINTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRCAIEKAVPHGRTVGRG
MRDKGAWDSVPKQADQAWAALNPRFKAITDKYPKLANTNNRGHLGTLGSGNHFIEVCLDE
TNRVWFMLHSGSRGVGNAIGNLFIQLAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAV
GWAQDFARQNRALMMHAVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGQEILVTRKG
AVSAQKGELGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVMSRTKAKSLFTVADQIRA
TAHVECRKDASVIDEIPMAYKDIDHVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagcagagctaccaactgctggaagtcgcccacggcaaaccgatcaagctctgg
accgaaggcgtcccggtagaaagcgaagccaggcagcaattgatcaacaccgcgaagatg
ccgttcatcttcaaacacctggcggtgatgcccgacgtgcacctgggcaagggctcgacc
attggcagcgtgattccgaccgtgggcgcgatcattccggccgccgtcggcgtggacatc
ggctgcggcatgatcgccgcgcgcacgtcgctaaccgccgcggatttgccggacaacctg
cacgggttgcgctgcgccatcgaaaaagccgtgccccacggccgcaccgtcggtcgtggc
atgcgggacaaaggggcctgggacagcgttccgaaacaggccgatcaggcgtgggctgcg
ttgaacccacggttcaaggcgatcaccgacaaatacccgaaactcgccaacaccaacaac
cgcgggcacttgggcacgttgggcagcggtaaccatttcatcgaagtgtgcctggatgaa
accaaccgggtctggttcatgctgcacagcggctcacgcggtgtcggcaacgccattggc
aacctgttcattcaattggctcaggccgacatgcgccagcacattgccaatcttccagac
cgcgacctggcgtatttcgaggaaggcagccggcattttgacgattacgtcgaagctgtc
ggttgggcccaggatttcgccagacagaaccgggcattgatgatgcacgcggtgattcag
gcaactcgcaaagtgatcagcaaaccgttcgaagtcgccctggaagcggtgaactgccac
cacaactacgtgcagaaagagcggcacttcggtcaggagattctggtcacccgcaagggc
gcggtgtcggcgcagaagggcgagttggggatcattccgggatcgatgggcgctaagagt
ttcatcgttcgcgggctcggtaacgagcagtcattctgttcctgcagccacggcgccggt
cgcgtcatgagccgcaccaaagcgaaaagtctgttcaccgtcgccgaccagatccgcgca
accgcccatgtcgagtgccgcaaggatgcgtcggtgatcgatgaaataccgatggcctac
aaagacatcgaccacgtcatgcacgcccagcgggaactggtggaagtgctgcacaccttg
cggcaggtggtgtgtgtgaagggatag
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