Pseudomonas sp. 31-12: DJ564_23035
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Entry
DJ564_23035 CDS
T11624
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DJ564_23035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pssz03019
]
DJ564_23035
03009 Ribosome biogenesis [BR:
pssz03009
]
DJ564_23035
Enzymes [BR:
pssz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DJ564_23035
Messenger RNA biogenesis [BR:
pssz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DJ564_23035
Ribosome biogenesis [BR:
pssz03009
]
Prokaryotic type
rRNA helicases
DJ564_23035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AWM93454
LinkDB
All DBs
Position
complement(4892909..4894582)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVGDAESTHGELLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagcc
gtcatcgcgactggctacgaagagccttcggctattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gctctgccaatcctgcaccgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgccccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaaactgggtttcatggacgacctcgaagttatcttcaaggctctgccgccaacc
cgtcagaccgtattgttctcggccaccctgcctcagtcgatccgtgccattgctgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgtaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgct
cagaaccagcgtgagcgcgtaatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgactgacgttgctgcccgtggcctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccttacgatcctgagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgctgaagttcgcctgccggacgcccaggctgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggttggtgatgccgagtcg
actcacggtgaactgctggatcgcctgactgccgacatcggctgcaccccgcgtgcactg
gccgctgctctgctgcgcaaggcaaccaacgctcaagcgctgactctggctgcaatcgag
aaagaacgtccactggtgccgaacaacgcaccgcgtggcgatcgtccagagcgtaccggt
gaccgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggctgaaggtcgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gccatcctcaacgaaggtggcttggctcgcgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggagcgtctgctgaccaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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