Pseudomonas sp. 31-12: DJ564_23480
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Entry
DJ564_23480 CDS
T11624
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz00521
Streptomycin biosynthesis
pssz00523
Polyketide sugar unit biosynthesis
pssz00525
Acarbose and validamycin biosynthesis
pssz00541
Biosynthesis of various nucleotide sugars
pssz01100
Metabolic pathways
pssz01110
Biosynthesis of secondary metabolites
pssz01250
Biosynthesis of nucleotide sugars
Module
pssz_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
DJ564_23480 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
DJ564_23480 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
DJ564_23480 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
DJ564_23480 (rfbB)
00525 Acarbose and validamycin biosynthesis
DJ564_23480 (rfbB)
Enzymes [BR:
pssz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
DJ564_23480 (rfbB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AWM93530
LinkDB
All DBs
Position
complement(4975638..4976714)
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AA seq
358 aa
AA seq
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MKILVTGGAGFIGSAVIRHIIYNTTDSVVNVDKLTYAGNLESLAEVSQSSRYMFERVDIC
DRDQIDRVLREHQPDAVMHLAAESHVDRSISGPSEFIQTNIIGTYTLLEAVRHYWDALGE
EGKANFRFHHISTDEVYGDLEGPEELFTETTPYQPSSPYSASKASSDHLVRAWSRTYGLP
ILVTNCSNNYGPYHFPEKLIPLIILNALEGKPLPIYGKGDQVRDWLYVEDHARALYQVVT
EGVIGETYNIGGHNEKQNIEVVHALCALLDELRPDSTYLPHSSLIINVQDRPGHDQRYAI
DASKIQRELGWTPEENFETGMRKTVEWYLANTEWVAHVKSGSYQQWIDQNYTDRSNKA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaattctagttaccggcggcgccggatttatcggctcggcagtcatccgtcatatc
atctacaacaccaccgactctgtcgttaacgtcgacaagctgacttacgccggcaatctt
gagtctttggccgaagttagccagagctcgcgttatatgtttgagcgtgtcgacatctgt
gatcgtgatcagattgaccgcgtgctacgtgaacaccaacctgatgccgtcatgcacctg
gccgcagagtctcatgttgatcgctcgatctctggtccttctgagtttatccagaccaat
atcattggcacttacaccctcttggaagctgtgcgccactactgggatgctctgggtgag
gagggcaaggccaatttccgttttcaccatatttcgactgacgaagtctacggcgacctc
gaaggtccggaagagctcttcaccgaaaccactccgtatcagccaagctcgccgtattct
gcgagcaaggccagctccgatcacctggttcgcgcttggagtcgcacttacggcctgccg
atcttggttaccaactgttccaacaactatggtccctatcatttccctgagaagttgatt
ccgctaatcattctgaatgcgttggaaggcaagccactgccgatttacggcaaaggtgat
caagttcgtgattggctctacgtcgaagatcatgctcgcgcgttgtaccaagtcgtgacc
gagggcgttatcggcgagacttacaacatcggtggccacaacgaaaagcaaaacattgaa
gtagtgcatgctctctgtgcattgcttgatgagttacgtcctgactcgacatatctcccg
cattcaagcttgatcatcaatgtccaggatcgcccaggccacgaccagcggtacgcaatt
gatgcgagtaaaatacagcgtgaattgggttggacgccggaagaaaacttcgaaaccggt
atgcgcaaaaccgtcgaatggtatttggctaatactgaatgggtggcacacgtcaaaagc
ggcagctaccagcaatggattgatcagaattacacagaccgttctaacaaggcataa
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