Pseudomonas sp. 31-12: DJ564_25695
Help
Entry
DJ564_25695 CDS
T11624
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DJ564_25695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pssz03400
]
DJ564_25695
Enzymes [BR:
pssz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
DJ564_25695
DNA repair and recombination proteins [BR:
pssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
DJ564_25695
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DJ564_25695
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DJ564_25695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AWM93932
LinkDB
All DBs
Position
complement(5432237..5433667)
Genome browser
AA seq
476 aa
AA seq
DB search
MTSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLFCQPSDDILPHPAACAIT
GITPGQLAEHGLSEADFMTRVHTQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGLAWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDV
RATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLLQPMVHVSGRFSAARSYVGVVLPL
AWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLADGELPVPLKLIHINKCPV
VAPLSVLRPDDQQRLGLDMALYQDRVLRLSDAQQVWRDKVLAIYAGEDFTPSQDPEQQLY
DGFIGDRDRRLCEQVRAADPAQLSQQQWPFDDERLPELLFRYRARNFPDTLNFEEQERWR
IFCQQRLSTPEWGAPNTLESFVEAAAQLNVTATSFQREVLNEWQNYVQGLRKRLSL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgatcttctggtacgactacgaaaccactggcatcaatccccgatgcgaccgc
ccgctgcaagtagcggggattcgcaccgacttcgatctcaatgaaatagacgagccggtc
aacctgttttgccagcccagcgacgacatcctgccgcatccggccgcctgcgcgatcacg
ggcattacgccgggccaactggccgaacacggtttgagcgaagccgacttcatgacccgg
gtgcacactcaactggcggcgccgggcacctgcggagcgggttacaacacgctgcgcttc
gatgacgagatgacccgttacagcctgtaccgaaacttcttcgacccgtatgcccgcgag
tggcagggtggcaacagccgctgggacctgattgatgtggtgcgtgccgcctatgccttg
cgtcccgatggcctcgcctggccaaccgatgatgaagggcgggtgacgctcaagctcgaa
cggctgaccgccgccaatggcattgaccacggcaatgcccacgaggcgctgtcggacgtt
cgcgccaccatcgcccttgcacgtcttattcgtgagaagcagccgaagttgtatgactgg
ctgtttcagttgcgcagtaaacagaaggtgatggatcagattcggctgttgcagccaatg
gtgcatgtgtccgggcgtttctcggcggctcgcagttatgtgggggtcgtgctgccactg
gcctggcatccgcgtaacaagaacgcgttgattgtctgtgacctgcacctggatccccag
gggttgcttgatctggatgcggagaccttgcgtcagcggctgtacacccgccgcgatgac
ctggccgacggcgaattaccggtgccgcttaaactcattcatatcaacaagtgcccggtg
gtggcgccgctgtcggtacttcgccctgacgatcagcaacgtctggggctggacatggcg
ctttatcaggatcgcgtactgcggctaagtgacgcacaacaagtttggcgggataaagtg
ttagcaatttatgccggcgaagatttcactccgagccaggatcccgaacaacagttatac
gatggttttatcggtgatcgggatcgtcggctatgtgagcaagtcagggccgccgaccct
gcccaattatcacaacagcaatggcctttcgatgacgaacgtttacctgaattattgttt
cgttatcgagcgcgcaacttccccgatacgttgaatttcgaggagcaagagcgctggaga
atattttgtcagcaacgtttgtcgaccccggagtggggggcgcccaatacgcttgaaagt
tttgtagaagccgcagcccaattgaacgttacagctacatcgtttcagcgagaggtgctg
aatgaatggcagaattatgtccaaggattacgcaaacgtttgagtctttga
DBGET
integrated database retrieval system
