Pseudomonas sp. 31-12: DJ564_29240
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Entry
DJ564_29240 CDS
T11624
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DJ564_29240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssz03021
]
DJ564_29240
03400 DNA repair and recombination proteins [BR:
pssz03400
]
DJ564_29240
Enzymes [BR:
pssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DJ564_29240
Transcription machinery [BR:
pssz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DJ564_29240
DNA repair and recombination proteins [BR:
pssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DJ564_29240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AWM94579
LinkDB
All DBs
Position
complement(6188323..6189324)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacaccccgccatattgatgtgcaggttgtcagt
ccaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccacaccctgggc
aacgcgctgcgacgcatcctgttgtcctcaatgcccggctgtgcagtagtcgaggccgag
attgacggtgtgctccatgagtacagcgccatcgaaggcgtacaggaagacgtaattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggtcgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtctaacggcgccctgaac
atgaagctcaccgtagctcgtggtcgtggttatgaaccggcagactcgcgtcagagcgat
gaagacgaaagccgcagcatcggtcgcttgcagcttgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaagctg
gttattgatctggaaaccaacggtaccctggatcctgaagaggctattcgccgcgctgca
accattctgcaacagcagttggctgcgttcgtcgacctcaaaggtgacagtgagccagtg
gttgttgagcaggaagacgagatcgatccgatcctgcttcgcccggttgacgatctggaa
ctgactgtacgttcggctaactgccttaaggcggaaaacatctactacatcggtgacctg
attcagcgtaccgaagtagagctgttgaagactccgaaccttggcaagaaatccttgact
gaaatcaaggacgttctggcctcccgcggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
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