Pseudomonas sp. 31-12: DJ564_29400
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Entry
DJ564_29400 CDS
T11624
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DJ564_29400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssz03021
]
DJ564_29400 (rpoB)
03400 DNA repair and recombination proteins [BR:
pssz03400
]
DJ564_29400 (rpoB)
Enzymes [BR:
pssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DJ564_29400 (rpoB)
Transcription machinery [BR:
pssz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DJ564_29400 (rpoB)
DNA repair and recombination proteins [BR:
pssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DJ564_29400 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
AWM94611
LinkDB
All DBs
Position
complement(6210556..6214629)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGLKTLEVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVAELRKFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
attaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggtaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcgctcggctatacc
actgaagaagtgctcgacgcgttctacaccaccaacgttttccacctgagcggcgaaacc
ctcagtctggaactgattgcttcgcgtctgcgtggtgaaatcgctgtacttgatattcag
gacgagaagggcaaggtcatcgttgaggcgggtcgccgtattactgcgcgccacatcaac
cagatcgaaaaagccggtctcaagaccctggaagtgcctctggactacgtcctgggtcgc
actaccgccaaggccatcgtgcatccggcaaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaattgccaaggcccaggttgttcgcatcgaaact
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagactctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgtcgcggttctgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgtgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaaacgtcgtgtatctgcactcggccct
ggcggtttgactcgtgaacgtgctggctttgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gccgcttatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtgaaa
gacgctctggtcaccgacgagatcgtcttcctgtctgccatcgaagaagctgaccacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagttggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccaaccctgcgcgct
gacaagccgctggtcggtactggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgattccgtcgacgccagccgtatcgtggttcgt
gttgctgatgacgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgtaaaggtgat
cgggttcagcgtagcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttggaccggaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaggccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggttggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgcctaccggcaccaagggtaccgtcatcgacgtacaggtcttcacc
cgcgacggcgtcgagcgtgatgctcgtgcactgtcgatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgccactttcgaacgtctg
cgttccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggac
atcaccgacgaagttctcgacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcagccaaaggt
ctgggcgagaagatcaaccggatgatcgaagagcagcgcaaagtcgccgagcttcgtaaa
ttcctcgacgagatctacaaccagatcggcggtcgtaacgaagatctggatagcttctcc
gaccaggaaatcctggatctggcgaagaacctgcgtggtggtgttccaatggccactcca
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaagctggcagacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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