Pseudomonas sp. 31-12: DJ564_31355
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Entry
DJ564_31355 CDS
T11624
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pssz Pseudomonas sp. 31-12
Pathway
pssz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pssz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DJ564_31355 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pssz03021
]
DJ564_31355 (rho)
03019 Messenger RNA biogenesis [BR:
pssz03019
]
DJ564_31355 (rho)
Transcription machinery [BR:
pssz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DJ564_31355 (rho)
Messenger RNA biogenesis [BR:
pssz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DJ564_31355 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AWM94969
LinkDB
All DBs
Position
complement(6618365..6619624)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgctaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctatctcgccggtccggacgacatttac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttatttcgcgctgctcaaggtcgacacgatcaac
tacgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacttgaccccgctgttc
ccgactgtgcgcatgaagatggaagccggcaacggttccaccgaagacttgaccggtcgt
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggtctgatcgttgcaccgccg
aaagccggtaaaacgatcatgctgcagaacatcgcagccaacatcgcgcgtaacaaccct
gaagttcatctgatcgtattgctgatcgacgaacgtccggaagaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggctcgcgcctacaacaccgtgatcccgagc
tccggcaaagtgctcaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggcgccgcgcggaacatcgaggaaggcggttcgctgaccatcattgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagaattcaaaggcaccggcaac
atggaactgcctctggaccgtcgtatcgctgaaaaacgcgtcttcccggccatcaacatc
aaccgttccggcacccgccgcgaagagttgctgacggccgacgacgagttgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaaatcgctgccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgacgagttcttcttgtcgatgaagcgtaagtaa
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