KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_0008
Entry
PSPTO_0008        CDS       T00118                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:pst00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:pst02048]
    PSPTO_0008
Enzymes [BR:pst01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     PSPTO_0008
Prokaryotic defense system [BR:pst02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   PSPTO_0008
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N T1R_D3-like ResIII T1RH-like_C DEAD HTH_Tnp_1 ATP-cone FAD-depend_C AAA_16
Other DBs
NCBI-ProteinID: AAO53565
UniProt: Q88BJ6
LinkDB
Position
11067..14366
AA seq 1099 aa
MSQSPEKVGVELPAINWLVKLGYTHLSSNQVQVEYRHLAPVLDDVLQARLLILNPWLESV
PGGIPTALIELRKRLNDELLPANKAFWEQVVHRSDIQVKDVEGRPRSVRFFDASDAANND
FHVVDQYVGRNADGDFFRPDLLLFVNGLPLAIIECKASHHRLDEALGQLDGYQNCFPTQF
VFNQVCVGLNRREGAYGAILTKPAYYARYRLQAQESAAVAALLGDVPSEQESLLWALFEP
SRFLQLITHFALFETRDGKTMKKLPRYQQWRAVRKTLDRLCAPKPMGGVVWHTQGSGKSL
TMALLARMLRADSTGLNNPTVLVLTDRKDLDKQIFDTFHAVGISAIQAVSVEGLLKMLSN
DYGSVFTSTVQKFQENEQPGEQPAVTPDEEDNALQATRHRRIREEKDFFILHERNVRHRQ
VDENGVLVKAKWEEISREKVHFRVLSTKSNFYVLVDEAHRSQYDFLAAFMRASLPNAKFI
AFTGTPLLQEDKHTLGEFGGGEYIDEYRLHEAVADGATLSIKYQDAWVALSANAELDAAF
KEQFSGQSEARQHELKRELLRRWRQAGNRMEQVAEHLVEHFLSNVKAKGLKAMLVCDGRD
MAVGYKDLLDAIMAERVQKGLPTFDSKVVISLASITASRTGASAMEEASEYEVDLDKIQS
IEERVKAEVKAGNTPVAMPSEQIGNFVSKLFPLPYGEESSGLDGKPQANNVGLIIVSDML
LTGWDAPIVGTMYLDKPLKEHTLLQAIARVNRTLPGKNAGYIVDYHGVVEHLDHALKIYG
GEVKPSQVWEGVETELPKLQATLDRILKLLPKKHDPVAQREGYKTDAERFLDPATRLDMV
EEFLDLVKQFNRSVDIILPDVRGVPFKPYFTLLGEIRLMLRDKLPGNTYKERITKLESVL
LQQLLDEYVAASPAKSLLGHEVSILDASDMARLKQLASPGSRALVMKNQLKHTIVTGKDK
DPAFFDKLAEELQKLLEEEKAGRITQAKFLEQLELFGQRIQDKDNTGFIKPAHSAVYHYL
TALLAEDTARVATTKLFEDGELSRTVATDNWKKMPDLHPDIRDHLRGLLMPLAGWERSVA
REHAKRILMYRNFNNSYTG
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgagccagtcaccggagaaagtcggggttgaactgcccgccattaattggctggtcaag
ctgggctacacccatctatccagtaatcaggtacaggttgaatatcgtcacctggcaccg
gtattggacgatgtgttgcaggctcgactgctgatcctcaacccgtggctggagagcgta
cccggtggcatccctaccgcactgatcgagctacgtaaacgtctcaacgatgagctgttg
cccgcgaataaggcgttctgggaacaggtggtgcaccgttcggatattcaggtgaaggac
gtcgaaggcaggccgcgtagtgtgcgtttcttcgacgccagtgatgccgccaacaacgac
ttccatgtggttgatcagtatgtggggcgcaacgctgatggggattttttccgtcccgac
ctactcctgtttgtgaatggcctgcccctggccatcatcgaatgcaaagccagccatcac
cgtctggatgaggccttggggcaactggatggctatcagaactgtttcccaacccagttt
gtattcaaccaggtatgcgttgggcttaatcggcgtgagggggcatatggtgcgatcctt
accaagcctgcgtactacgcccgctatcggttgcaggcgcaggaatctgctgctgtagct
gctttgctgggcgatgtcccgagtgagcaggaaagcctgctgtgggcattgttcgagccg
agtcgcttcctgcaactgattacacattttgcgctgttcgaaacccgcgacggcaagaca
atgaaaaagctgccgcgctatcaacaatggcgggccgtgcgcaaaacgttggatcgcctg
tgtgctccaaaacccatgggcggtgttgtctggcacacccagggtagcggtaagtccttg
accatggccctgctcgctcgcatgttgcgtgccgatagcaccggtttgaacaaccctact
gtgttggtactgaccgaccgcaaagacctcgacaaacagatcttcgatactttccatgca
gtgggcatcagtgctattcaggccgtgtcggttgaaggcttgctgaagatgttgtccaac
gactacggcagtgtgttcaccagcacggtgcagaagttccaggagaacgagcagcccggt
gagcagcctgctgtgactcctgatgaggaagacaatgccctgcaagcaacccggcaccgg
cggattcgcgaggagaaggacttcttcatcctgcatgagcgcaatgttcgccaccggcaa
gtggatgagaacggtgtgctggtgaaagccaagtgggaagaaatcagccgggagaaggta
catttccgggtgttgagtaccaaatccaatttctatgtgctggtcgatgaagctcaccgt
agccagtacgatttcctcgcggcttttatgcgcgccagtttgcccaacgccaagttcatt
gccttcacaggtacgccgctgctgcaagaggacaaacacacactgggtgagtttggcggt
ggtgaatacatcgacgaataccgcctgcatgaagcggtggcggatggcgcgaccctgtcc
atcaaataccaggatgcctgggtagcattgtcggccaacgctgaattggatgctgcattc
aaagagcagttctctggccagagtgaagctcgccagcacgagcttaagcgcgaactgctg
cgccgctggcgtcaggccggtaaccgtatggaacaggtcgctgaacatctggtcgagcac
ttcctcagtaacgtaaaggccaagggcttgaaggccatgctggtgtgcgacggacgcgat
atggcagtgggttacaaggatctgctcgatgcaatcatggccgagcgagtgcaaaaaggg
ctgccaacctttgacagcaaggtggttatttccctggccagcatcaccgcttcccgcacg
ggtgcttctgctatggaggaggcatcagagtacgaggtcgacctcgacaagatccaaagc
atcgaggaacgggtcaaggccgaagtgaaagccggaaacaccccggtggccatgccgtcc
gagcagattggcaactttgtcagcaagctgttccccctgccctacggagaggaaagtagt
gggttggatggtaaaccgcaggcgaacaacgttgggctgatcattgtctccgacatgctc
ctgaccgggtgggatgccccgattgtcggcactatgtacctcgacaaaccgctcaaggaa
cacacccttttgcaggctatcgcacgggtgaaccgcaccctgcccggcaagaatgccggt
tacatcgtggattaccacggagtggtcgagcacctcgaccatgcgctgaaaatttacggc
ggcgaagtgaagccttcacaggtctgggaaggtgtcgaaaccgaactgcccaagctgcaa
gccacgcttgaccgcatacttaagctgctgccgaaaaaacatgatccggttgcgcagcgt
gaggggtacaagactgacgccgagcgtttcctagatccagctaccagactggacatggtc
gaagagttcctggacttggtgaagcagttcaaccgctctgtggacatcattctgccggat
gtgcgcggcgtgcccttcaagccctacttcaccctgttaggtgaaatacggttgatgctg
cgggacaagctgccaggtaatacctacaaggagcgcatcaccaagctggagtctgtactg
cttcaacagctgctggatgagtacgttgccgccagtccggctaagagcctattgggccat
gaggtgtcgattcttgatgccagcgacatggcgcgcctgaagcagctggccagccctggt
agccgagccctggtgatgaagaaccagctgaaacatacaattgtcaccggcaaggacaaa
gaccctgcattcttcgacaagctggctgaggagctgcaaaagctgctggaagaagaaaag
gcgggtcgcattacccaggctaaatttctggagcaactggaattgttcggtcagcgcatc
caggacaaggacaacaccggatttatcaaacccgcacattcagcggtgtatcactaccta
accgcgctactggccgaggacacggccagggtggcaacgaccaaactgttcgaggatgga
gagctgagccggacggtcgccaccgacaactggaagaagatgccggatctgcacccggac
atcagagaccatctgcgcgggttgttgatgccgctggcggggtgggagcgctcagtagca
cgtgaacacgccaagcgaatcttgatgtataggaatttcaataattcctatacagggtaa

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