Pseudomonas syringae pv. tomato DC3000: PSPTO_0257
Help
Entry
PSPTO_0257 CDS
T00118
Symbol
gabD-1
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst00250
Alanine, aspartate and glutamate metabolism
pst00310
Lysine degradation
pst00350
Tyrosine metabolism
pst00650
Butanoate metabolism
pst00760
Nicotinate and nicotinamide metabolism
pst01100
Metabolic pathways
pst01120
Microbial metabolism in diverse environments
Module
pst_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PSPTO_0257 (gabD-1)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PSPTO_0257 (gabD-1)
00310 Lysine degradation
PSPTO_0257 (gabD-1)
00350 Tyrosine metabolism
PSPTO_0257 (gabD-1)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PSPTO_0257 (gabD-1)
Enzymes [BR:
pst01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PSPTO_0257 (gabD-1)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PSPTO_0257 (gabD-1)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PSPTO_0257 (gabD-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AAO53803
UniProt:
Q88AX6
LinkDB
All DBs
Position
279109..280566
Genome browser
AA seq
485 aa
AA seq
DB search
MLKNQLKDPSLLVDRAYVDGQWISADDGATLAISDPATGEVIAQVPALQGAETRRAIEAA
DRAWPAWRARPAAERAALLERWHQAMLDNVEDLALIMTLEQGKPLNESRGEIRYGASFVK
WFAEEARRSYGETIPTPSADRRLMTLKQPVGVCAAITPWNFPNAMITRKCAPALAAGCTI
IVKPSDLTPLSALALAVLAERAGIPVGVFSVVTGMPTAIGEELTGNPVVRKISFTGSTPI
GRLLMRQSAEHIKRLSLELGGNAPFIVFDDADLEQAVAGIMLSKFRNAGQTCVCANRILV
QSGIYDRFAARLVEEVAKLKVGNGLEEGVTIGPLINPAAVSKIARHIDDALSQGAKLLYG
GLPNGDGQFVQPTVLGDTHAGMLLANEETFGPVAPLMRFTDEAEALALANATPYGLAAYY
FTQDLRRSWRFGEALEFGMVGLNTGIISMEIAPFGGIKQSGLGREGSSYGLDEYLEVKAF
HVGGL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagaatcagttgaaagaccccagcctgctggtggaccgcgcctacgtcgatggg
caatggatcagcgctgatgatggtgcaacgctggccatcagcgacccggcgaccggcgaa
gtgatcgcgcaggttccggccttgcaaggcgctgaaacccgccgcgccatcgaggccgct
gatcgtgcctggcctgcctggcgcgcgcgtcctgccgccgagcgtgcggcgctactggag
cgctggcatcaggcgatgctcgacaacgtcgaagacctcgcgctgatcatgacccttgag
cagggcaagccgctgaacgagtcgcgtggcgagatccgctatggcgcaagcttcgtcaaa
tggttcgctgaagaagcgcgccgctcgtacggtgaaaccattcccacgcccagcgctgat
cgtcgtttgatgacgctcaaacagccggtcggtgtctgcgccgcgatcaccccgtggaat
ttccccaacgccatgatcacccgcaaatgcgcgccagctctggctgcaggctgcacgatc
atcgtcaaaccgtcggacctcacgccgctgtcggcgctggcgctggcagtgctggccgag
cgcgcgggcattcctgttggtgtgttcagcgtcgtcaccggcatgccgaccgccatcggc
gaagagctgaccggcaacccggtggtgcgcaagatttccttcaccggctccacgccgatc
ggccgtctgctgatgcgccagagcgccgaacacatcaagcgcctgagcctggaactgggg
ggcaacgcgccgttcatcgtgtttgacgacgctgatctggagcaggctgtggccggcatt
atgctcagcaaattccgcaacgccgggcaaacgtgcgtgtgcgccaaccggattctggtg
cagagcggcatttacgaccgtttcgctgcgcggctggtggaagaagtcgccaaactcaag
gtcggcaacggtctggaagagggcgtgaccatcggcccgttgattaatccggcagcggtc
agcaaaattgcccggcacatcgacgatgcgctgagccagggcgcgaagttgctgtacggc
gggttgcccaacggtgacggccagttcgtccagccaacggtattgggtgatacccatgcg
ggcatgctgctggccaacgaagaaaccttcggcccggttgccccgctgatgcgtttcacc
gacgaagccgaggccctcgcactggccaacgcaacgccctacggccttgccgcttactac
ttcacccaggacctgcgtcgctcatggcgtttcggcgaagcgctggaattcggcatggtc
ggcctcaacaccggcatcatctccatggaaatcgcccccttcggcggcatcaaacaatcc
ggcctgggccgcgaaggctccagctacggcctggatgaatacctggaagtgaaggcgttt
catgtgggtgggttgtag
DBGET
integrated database retrieval system
