Pseudomonas syringae pv. tomato DC3000: PSPTO_0300
Help
Entry
PSPTO_0300 CDS
T00118
Symbol
gabD-2
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst00250
Alanine, aspartate and glutamate metabolism
pst00310
Lysine degradation
pst00350
Tyrosine metabolism
pst00650
Butanoate metabolism
pst00760
Nicotinate and nicotinamide metabolism
pst01100
Metabolic pathways
pst01120
Microbial metabolism in diverse environments
Module
pst_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PSPTO_0300 (gabD-2)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PSPTO_0300 (gabD-2)
00310 Lysine degradation
PSPTO_0300 (gabD-2)
00350 Tyrosine metabolism
PSPTO_0300 (gabD-2)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PSPTO_0300 (gabD-2)
Enzymes [BR:
pst01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PSPTO_0300 (gabD-2)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PSPTO_0300 (gabD-2)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PSPTO_0300 (gabD-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AAO53845
UniProt:
Q88AT6
LinkDB
All DBs
Position
325765..327207
Genome browser
AA seq
480 aa
AA seq
DB search
MQLKDSTLFRQQAYINGQWLDADGGQSIKVNNPATNEILGTVPKMGAAETRRAIEAADKA
LPAWRALTAKERGNKLRRWFELMIENQDDLGLLMTLEQGKPLAEAKGEITYAASFIEWFA
EEAKRVYGDVIPGHQPDKRLIVLKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPFSALALAELAERAGIPAGVFSVVTGSAGDIGSELTGNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAMISKYRNNGQTCVCANRIYVQDG
VYDAFAEKLKVAVGKLKIGNGLEDGITTGPLIDEKAVAKVKEHIADAVSKGATVLTGGNS
LEGSFFEPTILVNVSKDAAVAREETFGPLAPLFRFKDEAEAIALANDTEFGLASYFYAQN
MSRVFRVAEALEYGMVGINTGLISNELAPFGGIKSSGLGREGSKYGIEDYLEIKYLCLSV
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttaaagattccaccctgttccgccagcaagcctacatcaacggccagtggctg
gatgcggacggtggtcagtcgatcaaggtcaacaacccggcgaccaacgagatcctcggc
actgtgccgaaaatgggcgcggccgagacgcgtcgggcgattgaggcggctgacaaggcg
ctgccggcctggcgtgcgctgaccgccaaagagcgcggtaacaagctgcgtcgctggttc
gagctgatgatcgagaatcaggacgacctgggtctgctgatgaccctggagcagggcaag
ccgctggctgaggccaagggcgagatcacgtatgcagcgtcgtttatcgagtggttcgct
gaagaagccaagcgcgtgtacggcgatgtgatccccggtcaccagccggacaagcgtctg
attgtgctcaagcagccgattggtgtgacggcggcgattacgccgtggaatttcccggca
gcgatgatcacccgcaaggccggccctgcgctggcggcgggttgcacgatggtgctcaag
cctgcgtcgcaaacgccgttttctgcgttggcgctggctgaactggccgagcgtgcgggt
attccggccggcgtgttcagcgtggtgacgggcagcgcgggcgatatcggcagcgagctg
accggtaacccgatcgtgcgtaaattgtccttcacgggttcgaccgagatcggtcgccag
ttgatggctgaatgcgccaaggacatcaagaaagtgtcgctggagctgggcggtaacgcg
ccttttatcgtgttcgacgacgccgacctcgacaaggccgtcgaaggcgcgatgatctcc
aagtaccgcaacaacggtcagacttgcgtctgcgccaaccgcatctatgtgcaggacggc
gtgtatgacgcattcgccgagaagctcaaggtggcggtcggcaagctgaaaataggtaac
ggcctggaagacggcattaccactggcccgttgattgatgaaaaggccgtggccaaggtc
aaggagcacattgccgacgctgtcagcaaaggtgcgaccgtgctgaccggtggcaacagc
ctggaaggctcgttcttcgagccgactattctggtcaatgtgtcgaaagatgccgccgtt
gcccgagaagagacgttcggtccgctggccccactgttccgtttcaaggacgaggctgag
gcgattgcgctggccaacgataccgagttcggtctggcgtcgtacttttatgcgcagaac
atgagccgcgtgttccgggtggccgaggcgctggaatatggcatggtgggtatcaacacc
ggcctgatctccaacgaactggcaccgttcggcgggatcaagtcgtccggcctgggccgt
gaaggttccaagtacggcattgaagattatctggaaatcaaatacctctgcctgtcggtc
tga
DBGET
integrated database retrieval system
