Pseudomonas syringae pv. tomato DC3000: PSPTO_0334
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Entry
PSPTO_0334 CDS
T00118
Symbol
algB
Name
(GenBank) alginate biosynthesis transcriptional regulatory protein AlgB
KO
K11384
two-component system, NtrC family, response regulator AlgB
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSPTO_0334 (algB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pst02022
]
PSPTO_0334 (algB)
Two-component system [BR:
pst02022
]
NtrC family
KinB-AlgB (alginate production)
PSPTO_0334 (algB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA
Mg_chelatase
VpsR
AAA_2
AAA_22
cREC_REC
AAA_19
HTH_23
MCM
Xre-like-HTH
HTH_29
AAA_16
HTH_50
nSTAND3
DUF1858
HTH_17
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AAO53879
UniProt:
Q88AQ2
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Position
363589..364935
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AA seq
448 aa
AA seq
DB search
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDL
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLAT
AKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILETARQVAVTDANILILGESGTG
KGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRF
REDLLYRLNVITLHLPALRERSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRW
PGNIRELRNVIERASIICPQERVEVSHLGMAEQPANNAPRVGAALSLDELEKAHIGAVLA
TSETLDQAAKTLGIDASTLYRKRKQYNL
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagccactgagaatcagggccgtattctgcttgtggacgatgagtccgccatc
ctccgcaccttccggtactgtctggaagacgaaggttatagtgtcgccactgccaacagc
gcagcgcaggccgacacgctcatgcaacgccaggtgttcgacctgtgcttccttgatttg
cgtctgggagaagacaacggcctcgatgtgctggcgcagatgcgcattcaggcgccgtgg
atgcgcgtggtgatcgtgactgcgcactcggcggtggataccgctgtcgatgccattcag
gcaggtgcagccgactatctggtcaaaccctgcagccctgaccaattgcgcctggcgacc
gccaagcagcttgaagtccgtcagctgtctgcacgcctcgaggcgctcgaaggcgaagtt
cgcaagcccaaggacggactggattcccacagcccttcaatgatggccattctggaaaca
gcccgtcaggtcgcggtcaccgatgccaacatcctgattctgggtgagtcgggcacgggt
aagggcgaactggctcgggcgattcatggctggagcaagcgcgccaagaagtcctgcgtc
acgatcaactgcccatcgctcaccgcagagctgatggaaagcgaattgttcggtcacagc
cgcggggccttcaccggtgccagcgaaagcacgctggggcgcgtcaatcaggcggacggc
ggtacgttgtttctcgacgagatcggtgactttccgctgacgctgcagcccaagctgctg
cgctttattcaggacaaggaatacgagcgcgttggcgatccggtcacccgcagggccgac
gtgcgcatccttgctgccaccaacctcaatctggaggacatggtgcgcagcggacgcttc
cgcgaagacttgctgtaccgcctgaacgtcatcaccctgcatttgcctgccttgcgtgag
cgcagcgaagacattctgaccctggcggaccgctttctggcccgcttcgtcaaagagtac
gcccgcccggcacggggtttcagcgaagaagcccgcgccgcgctgctcaactaccgctgg
ccgggcaacattcgtgagctgcgcaacgtgatcgaacgcgccagcatcatctgcccgcag
gagcgtgtagaggtcagccatctgggcatggccgagcaaccggcgaacaacgcgccgcgc
gtcggggccgctctgagtctggacgagctggaaaaagcgcacatcggtgccgtgctggcg
accagcgaaaccctggatcaggccgccaagacgctgggtatcgatgcttcgacgctttac
cgcaaacgcaaacagtacaacctatga
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