Pseudomonas syringae pv. tomato DC3000: PSPTO_0444
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Entry
PSPTO_0444 CDS
T00118
Name
(GenBank) RNA polymerase sigma-70 family protein
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSPTO_0444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pst03021
]
PSPTO_0444
Transcription machinery [BR:
pst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSPTO_0444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
HTH_24
PhyR_sigma-like
Sigma70_ECF
HTH_11
HTH_31
Sigma70_r3
MerR
MarR_2
HTH_40
HTH_3
HTH_10
HTH_36
HTH_28
TnsD
HTH_IclR
HTH_29
PCI
HTH_5
FaeA
Phage_terminase
EAP30
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AAO53988
UniProt:
Q88AE6
LinkDB
All DBs
Position
489138..489656
Genome browser
AA seq
172 aa
AA seq
DB search
MSSVPSAHSEIVGALYRDHRGWLLAWLRRNVACPQRAQDLSQDTFVRLLGRDELQLPREP
RAFLATIAKGLMFDYFRRAALEQAYLGELLQVPEAEQPSPEEQLLILEDLKAIDRMLGTL
SSKARAAFLYNRLDGLSHGEIAERLGVSVSRVRQYLAQAVRQCYVALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagtcccaagcgctcatagcgagatcgttggtgcgttgtatcgcgatcatcgc
ggctggttgctggcctggctgcggcgcaatgtcgcttgcccacaacgggctcaggacctg
agccaggacacgtttgtgcgcctgctggggcgcgatgaactgcaattgccccgcgagccg
cgtgcttttctggcgaccatcgccaaaggtctgatgttcgattacttccggcgggccgcg
cttgaacaggcttatcttggggaattgctgcaggtccccgaggccgagcagccgtcgccc
gaagagcaactgctgattctggaagacctcaaggctatcgatcgcatgctgggcacgctg
tccagcaaagcgcgggctgcgtttctctataaccgcctcgacgggctgagccacggcgag
attgccgagcgcctgggtgtttcggtatcacgcgtcaggcagtacctcgcccaggctgtg
cgccagtgctatgtcgcgctgtacggcgagccgacatga
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