Pseudomonas syringae pv. tomato DC3000: PSPTO_0563
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Entry
PSPTO_0563 CDS
T00118
Name
(GenBank) polyamine ABC transporter, periplasmic polyamine-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PSPTO_0563
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pst02000
]
PSPTO_0563
Transporters [BR:
pst02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
PSPTO_0563
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
AAO54105
UniProt:
Q88A34
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All DBs
Position
618732..619766
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AA seq
344 aa
AA seq
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MLKSLKFTAITLGLMCAAQAMAATDLTVISFGGANKAAQEKAFYAPWEKAGNGKIIAGEY
NGEMAKVKTMVDTKSVSWDLVEVESPELARGCDEDMFEELDPKLLGNAADFVPGAITTCG
AGFFVWSTVLAYNADKVASAPSGWVDFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKD
VYKVLASKDGQDRAFKKLDELKPNIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKES
NLKVVWTGGVYDFDAWAIPKGSKNADAAKKFIAFMLSPEQQKTYSQNIAYGPANTQAVKL
LDKETLQNMPTTPENIKDQVQMDVAFWTDNGESLEQRFTAWAAK
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagtctttgaagttcaccgccatcacgttgggcctgatgtgcgccgcgcaagcc
atggccgccaccgacctgaccgtcatttccttcggcggtgccaacaaggccgctcaggaa
aaagcgttctatgcgccgtgggaaaaggccggcaacggcaagatcattgccggtgagtac
aacggtgaaatggccaaggtcaaaaccatggtcgacaccaagagcgtttcctgggacctg
gtagaagttgaatcgccggagctggctcgcggctgcgatgaagacatgttcgaagagctg
gacccgaaactgctcggcaatgccgctgacttcgtgcctggcgccatcaccacctgcggt
gcgggcttcttcgtctggtccaccgtgctggcctacaacgccgacaaggttgccagcgcg
ccaagcggctgggtcgatttctgggacaccaagaaattccctggcaagcgcggcctgcgc
aaaggcgccaaatacaccctggaattcgcgttgatggccgacggcgttgcgccgaaagac
gtctacaaagtgctggccagcaaagacggtcaggaccgtgcgttcaagaaactcgatgag
ctcaagccaaacatccagtggtgggaagccggcgcacagccgccgcagtacctcgcttcc
ggtgacgtggtgatgagctcggcctacaacggccgtatcgctgccgtgcagaaagaaagc
aacctgaaagtggtctggaccggcggcgtatacgacttcgatgcctgggcgattccaaag
ggctcgaaaaacgccgatgcagcaaagaaattcatcgctttcatgctgagcccggagcaa
cagaaaacttactcgcagaacatcgcctacggcccggccaacacccaggcggtcaagctg
ctggataaggaaacgctgcagaacatgcccaccacacctgagaacatcaaggatcaggtg
cagatggacgtggcgttctggaccgacaacggcgaatccctcgagcagcgtttcactgcc
tgggctgccaagtaa
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