Pseudomonas syringae pv. tomato DC3000: PSPTO_0654
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Entry
PSPTO_0654 CDS
T00118
Symbol
uvrA
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSPTO_0654 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_0654 (uvrA)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPTO_0654 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSPTO_0654 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
BCA_ABC_TP_C
AAA_23
RsgA_GTPase
AAA_21
DnaJ_CXXCXGXG
nSTAND3
Viral_helicase1
AAA_25
cobW
Motif
Other DBs
NCBI-ProteinID:
AAO54196
UniProt:
Q889U3
LinkDB
All DBs
Position
complement(706024..709002)
Genome browser
AA seq
992 aa
AA seq
DB search
MGIVHGITSCEPAAILPVPSLYSTYATLCRVMARSRILRRLCPPSEAAVDKILIRGARTH
NLKNIDLTLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPD
VDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDHDIPLEAQTV
SQMVDLVLTQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVNGRLCELDELPKL
DKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEPGEEVIFSARFA
CPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNAELTLAEGAIRGWDRR
NVYYFQMLGSLSKHYGFSLEVPFKEIPADMQKVLLNGSGSQSVDFRYLNDRGDIVKRAHP
FEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHVWVGEKTLPAVTN
LPIGDATHYFETLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLTLDRSADTLSGGEAQ
RIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRL
ADYVVDIGPGAGVHGGHIVAEGTPDEVMAHPDSLTGKYLSGRVKIAVPAKRTPRNKKLSL
TLKGARGNNLQNVNLDIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAAH
DSINGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSF
NVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKNVHEVLEMTI
EEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTL
YILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSRGG
QIIATGTPEQVAEMEQSYTGHYLKPLLIRDRA
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
gtgggtatcgtgcatggaataacctcgtgtgaaccggcggcgattctaccagtcccatcg
ttgtacagcacatacgcgacgctttgccgcgtgatggctcggagccgtatactccgtcgt
ttatgcccgccaagcgaggccgcagtggacaagatcctgatacgtggggcacgaacccac
aacctgaaaaatattgacctgacacttccccgcaacaaactgatcgttatcaccgggctc
tccggctcaggcaagtcttcgctggctttcgatacgctgtatgccgaagggcaacgccgt
tacgtcgagtcgctgtctgcctatgcacgacagtttctgtcgatgatggagaagccggac
gtcgatacgatcgaaggtctgtcgccggccatttccatcgagcagaaatccacgtcgcac
aacccgcgctcgaccgtgggcacgattaccgagatttacgattacctgcgtcttttatat
gcgcgggtcggacagcctcgctgcccggatcacgatattccgctggaagcccagaccgtc
agccagatggttgacctggtgctgactcaacccgaaggcagcaaactgatgctgctggcg
ccggttattcgcgagcgcaagggtgaacacctttcggtattcgaagagctgcgtgcgcag
ggttttgtgcgggcgcgggttaacggtcggctgtgtgagctggatgaactgccgaagctg
gacaagcagaagaagcactccattgacgtggtagtggaccgcttcaaggttcgcgccgac
ctgcagcagcgtctggccgagtctttcgagacggcattgaagctggcagacggcattgcg
ctggtcgcaccgatggacgacgagccaggcgaagaagtaattttctccgcccgcttcgcc
tgcccgatctgtggccacgcgatcagcgagcttgaacccaagctgttctcctttaacaac
ccggctggcgcatgcccgacctgcgacggtctgggcgtgaagcagttctttgatatcaag
cggctggtcaacgccgagctgacgctggctgaaggcgcgatacgcggctgggacaggcgt
aacgtctattatttccagatgctcggctcgctgtccaagcactacggtttcagcctggaa
gtgccgttcaaagaaatcccggccgacatgcagaaggttctgcttaatggcagcggctcg
cagagtgtcgacttccgctatctgaatgatcgcggcgatatcgtcaaacgtgcgcacccg
ttcgaaggcatcgtgccgaatctggaacgtcgctatcgggaaaccgaatcagcgaccgtg
cgcgaggagctggccaagtttctcggtacacagccctgccctgactgccgcggcactcgc
ctgcgtcgcgaggcacgtcatgtgtgggtgggtgaaaagaccttgcctgcggtgaccaat
ctgccgattggcgacgccacgcattattttgaaacgctgaagctgaccggccgacgcggc
gaaattgccgacaagattctcaaagagatccgcgagcgtttgcagtttctggtaaacgtc
ggtctggactacctgaccctggatcgcagcgcagacacgctgtctggcggtgaagcgcag
cgcattcgtctggccagtcagatcggtgcgggcctggtcggagtgatgtacatcctcgat
gagccgtctattggcctgcatcagcgcgacaacgaccgtttgctgggcacgctcaagcac
ctgcgcgacatcggcaacacggtgattgtggtcgagcatgatgaagatgcgattcgtctc
gccgactacgtggtcgatatcggccctggcgctggcgtgcacggcgggcatatcgttgcc
gaaggcacgccggacgaggtgatggcgcaccctgactcactgaccggcaaatacctgtcg
ggacgtgtgaagatcgccgtacccgccaagcgcacgccccgcaacaagaagctgtcgttg
acactcaagggtgcgcgtggcaacaacctgcagaacgtcaacctcgacattccgattggc
ctgctgacctgtgtgacgggcgtttccggttcgggcaagtcgacgctgatcaacaacacg
ctgttcccgctgagtgctacggcgctcaacggcgcaacgacgcttgaggctgccgctcac
gacagcatcaacggcctgcagcatctggacaaggtcgtggacatcgatcagagccctatc
ggtcgtacgccacgctccaacccggcgacttataccgggctgttcacgccgattcgcgaa
ctgtttgccggtgtgccggaatcgcgctcgcggggctatggcccgggacggttctcgttc
aacgtcaagggcggtcgttgcgaagcgtgtcagggcgatggcttgatcaaggtcgagatg
cactttctgccggacatctatgtgccgtgcgatgtgtgcaagagcaagcgctacaaccgt
gaaacccttgagatcaaatacaagggcaagaacgtccacgaagtgcttgagatgaccatc
gaagaagcgcgcgagttcttcgacgccgtccctgcactggcgcgcaagctgcaaaccctg
atggacgtagggctttcctatatcaagctgggtcaatcggcgaccaccctgtcgggcggt
gaagctcagcgcgtcaagctgtcgcgtgagctgtccaagcgcgacactggcaagacgctt
tatatcctcgacgaaccgactaccggcctgcactttgccgatattcaacagttgctggat
gtcctgcatcgcctgcgcgaccatggcaacacggtggtggtaatcgagcacaatctggat
gtcatcaagacggcagactggttggtggacctggggccggaaggcggctcaagaggcggg
cagatcattgcgaccggcacacctgagcaggtcgccgagatggagcagtcgtataccggg
cattacctcaagcctctgttgatcagagacagggcttaa
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