Pseudomonas syringae pv. tomato DC3000: PSPTO_1121
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Entry
PSPTO_1121 CDS
T00118
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_1121 (phrB)
Enzymes [BR:
pst01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
PSPTO_1121 (phrB)
DNA repair and recombination proteins [BR:
pst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
PSPTO_1121 (phrB)
Prokaryotic type
PSPTO_1121 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
CAP59_mtransfer
Motif
Other DBs
NCBI-ProteinID:
AAO54650
UniProt:
Q888A9
LinkDB
All DBs
Position
complement(1234091..1235539)
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AA seq
482 aa
AA seq
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MQLIWLRSDLRVHDNTALTAAMQRGPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVELEK
ALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQAD
GVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLSIK
SDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQLS
AYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHRA
FRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIK
RWLPELADLNKKQIHDPASVGGLFGVADYPKPIVDLSKSRARALAAFKALPTRQPAAGAD
NG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgatctggctgcgtagtgacctgcgcgttcacgataataccgccctgacggca
gccatgcagcgcggcccgacgctggcggtgtacctgctcagcccgacgcagtggcgcaac
cacgacgacgccgattgcaaagtggacttctggctgcgcaatctggtggagctggaaaaa
gcccttggcaaactgaacgtgccgctgctgattcgcgaagccgatacctgggatcaggca
cccgaggtgctggcgacgctgtgcaaacagttcaaggtcgaggggctgcaccttaatgaa
gaatacggcatcaacgaaacccgtcgtgatcaggccgtgcagcagtcaatgcaggcggac
ggtgttcacttcaccagccaccttgatcaattgctgttcaagccgggcagtatcctgacc
aagaccggcaactatttccaagtgttcacccagttcaagaaggtctgttacacccgcctg
caccaagccatgccgcggacggtgcacacgcccgaagcgcagcaaccgctgtcgataaaa
agtgacgcgatcccggatcaggtgaagggcttttccacaccgtcgaaaaccctgcgtgac
ctgtggcccgcaggtgaggtcgaggcaagccgccggatcgaagcgttcgccggcgaacag
atcagttactacaaagacgaacgcgacttcccggccaggcccggcaccagccagttgtcg
gcctatctggcggcaggcgttatttcgccccgtcagtgcctgcatgccgcgctggccagc
aatcagggcgaatttgaaaccggtgatgtcggaaccgtgacctggatcaatgagctactg
tggagagagttctataagcacacgctggtaggctacccgcgcgtttcgcgtcaccgtgca
tttcggccggagaccgaagcgctgaaatggcgcgacgcccccgaagaactgctggcgtgg
caagaagcccgcaccgggctgccgatcattgacgcggccatgcgtcagttgctggaaacc
ggatggatgcacaatcggctaaggatggtcgtggcgatgtttctcactaaaaacctgttg
atcgactggcgggaaggcgagcgcttttttatgcgccacctgatcgacggcgacctggcg
gccaataacggcggctggcagtggagttcgtccacaggcaccgattcggccccctacttc
cgtatcttcaacccactgtcgcaatcggaacgattcgaccccgaaggcgtgttcatcaaa
cgctggctgccggagctggctgacctgaacaaaaaacagatacacgatcccgcttctgtc
ggcggcctgttcggcgtcgccgattacccgaagccgatcgtcgacctgagcaaaagccgc
gcccgcgcgctggctgccttcaaggcactcccgactcgccaacccgctgcgggagctgac
aatggctga
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