Pseudomonas syringae pv. tomato DC3000: PSPTO_1549
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Entry
PSPTO_1549 CDS
T00118
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03030
DNA replication
pst03430
Mismatch repair
pst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPTO_1549 (dnaE)
03430 Mismatch repair
PSPTO_1549 (dnaE)
03440 Homologous recombination
PSPTO_1549 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pst03032
]
PSPTO_1549 (dnaE)
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_1549 (dnaE)
Enzymes [BR:
pst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSPTO_1549 (dnaE)
DNA replication proteins [BR:
pst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSPTO_1549 (dnaE)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSPTO_1549 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAO55069
UniProt:
Q886M8
LinkDB
All DBs
Position
1708384..1711905
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSG
IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV
AQASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYIEVQRTNRANDEEH
LHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHNYSDQQYLK
SPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLDIAFIPLDDLPTYQ
LLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAI
KGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFELEP
KAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEADADVYANHRKTRE
LSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGLIIALRVM
KNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
AKRVMSIEDARTNLAESLRVTVHADALKGERLRWLGDLCKRHRGACPITVDYTGQDARAL
LQLGEAWRIDPADSLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttctttcgttcatctacgcctgcacaccgagtactcgctggttgacggtctg
gtccgggtcaaaccgttgatcaagtcgctgaccagcatgaacatgcctgccgtggcggtg
accgatcagaacaacatgtgttcgctggtcaagttctacaaagccgctcagggctccggg
atcaagccgatctgtggcgtcgatctgtggctggctggccgcgatgaagacgccgcgctc
agtcgcatcagcctgctggccatgaacgcccaaggctatcgcaacctcaccgagctgatt
tcccgtggtttcatcgagggtcagcgtaatggccagatcgtcattcagcgccagtgggtc
gcgcaagccagcgagggcgtgattgcgctgtccgcagccaaggaaggcgagatcggcatg
gcgctgctcggtggcaatccaggagaagcggacgagttgctgcgcgaatggctgaccgtg
tttcctgaccgcttctacatagaagtgcagcgtaccaatcgcgccaatgatgaagagcat
ctgcacgccgcggttgccctggccgagcgccacggtgcaccgctggtcgcgaccaacgat
gtgcgctttatcaaccaggctgatttcgaggcgcacgagacccgcgtgtgcatcggcgaa
ggccgggcgctggacgatcctcggcgctcgcacaactacagcgaccagcagtacctgaaa
agcccggaagaaatggccgaactgttcagcgatctgcccgaggcgctggaaaactccgtc
gagattgccaagcgttgcaacatcgacgtcaagctgggcactcacttcctgcccaacttc
ccgatccccgatggcatgaccatcgatgagtatttccgcaaggtgtctttcgacggtctg
gaggagcggcttgccgtcctgatgcccagggacaccactgaagattacgaaaccaaacgt
caggtgtatgtcgatcggctgaatttcgagctggatatcatcatccagatggggtttccc
ggttacttcctgatcgtgatggacttcattcagtgggccaagagcaacggcgtcccggtg
gggccaggccgtggatcgggtgccgggtcgctggtggcttatgtgcagaagatcaccgac
cttgatccactggaatacgacctgctgttcgaacgtttccttaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgatcgggtcatcgaatacgtg
gccgaaaagtacgggcgcaatgcggtcagccagatcatcacgttcggttccatggcggcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctatgggctggcggatcgt
ctgtcgaagatgatcccgttcgaggtcggtatgaccctcgaaaaagcgtacgagcaggaa
gagattcttcgcgactttctcaaggtcgatgaagaggccgccgaaatctgggaaatggcg
cgcaagcttgaaggcattgtgcgtaacgtgggcaagcacgccgggggcgtggtaatcgcc
ccgaccaagctgaccgacttctcgccgatctattgcgacgaggccggtgacggtctggta
acccagttcgacaaggacgatgtcgaggcagcggggctggtgaagttcgacttcctcggt
ctgcgcaccctgaccatcatcgactgggcactcaagactatcaatcgcgatcgcgccaag
gtcgacgaagcgccgctggacatcgcgtttatcccgctcgacgacctgccgacctaccag
ttgttgcagcgcgccgaaaccacggcggtgttccagcttgagtcgcgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagaccttatcgcactggtggcgctgttt
cgccccggcccgctgcaatcgggcatggtagacgacttcatcaaccgcaaacacggtcgc
gccgagttgtcctacccgcacgtcgactaccagtacgaaggcctcaagccagtactggcg
ccgacctacggcatcattctgtatcaggaacaggtgatgcagatcgctcaggtcatggcc
ggttacaccctcggtggtgcggacatgctgcgccgtgcgatgggcaagaaaaagcccgag
gaaatggccaagcagcgtggcggtttcattgacggctgcaagtcgaacaacatcgagcct
gatctggccggtaacattttcgacctggtggaaaaattcgccggttacggtttcaacaag
tctcactcggcagcctacgggctggtgtcgtaccagacggcctggctgaaaacccactac
ccggcgccgttcatggccgccgtgttgtcggcggacatgcacaacaccgacaaggtcgta
accttgatcgaagaagtgcgcacgatgaagctgcgcctcgacgcaccggacgtgaacacc
tcggagttcaagttcaccgtaagcgacgacggccgtattctctacgggctgggtgcaatc
aagggggtgggtgaggggccggtcgaagccattaccgatgcgcgtcaaaaggggccgttc
aaggacctcttcgatttctgtgcgcgtgtcgacctcaaaagaatcaacaagcgaacgctg
gacggcctgattcgcagtggcgcgctggaccgtctcggcccgtacttcgaactggagccc
aaggcctatcaggccagtatcgaccgtaaccgttcggtattgctggccgcgctggaagag
gccattcaagcggccgagcagactgcccgaagccacgacagcggccattcggacctgttt
ggcggcctgttcgtcgaagcggatgccgacgtttacgccaatcatcgcaagacccgcgag
ctgagcctcaaggatcgtctgcgcggcgagaaggaaaccctggggctgtacctgaccggg
cacccgatcgatgaatacgaaggcgagatccgccgctttgcccggcagcgaatcatcgac
ctcaagcccgccagggacacccagacggttgcgggtctgatcattgccctgcgcgtgatg
aaaaacaagaagggcgacaagatggggttcatcaccctggacgatcgctcggcgcgtatt
gaagcgtctttgttcgccgaagcgtttcactccgcccagtcactgttgcagaccgatgct
atggtagtggtcgagggcgaagtcagtaacgatgacttttccggtggcctgcggttgcgc
gccaaacgggtgatgagcatcgaagatgcgcgcaccaacctggccgagagcctgcgcgtg
acggtgcatgccgacgcgctcaagggcgagcgactgcgctggctcggcgatttgtgcaag
cgccatcgcggtgcttgtccgatcaccgtggattacaccgggcaggacgcccgggcattg
ctgcaattgggagaagcctggcgtattgatcccgcagacagcttgattcaagctctgcgt
gaccagttcggacgtgagaacgtctttctccagtatcgttga
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