Pseudomonas syringae pv. tomato DC3000: PSPTO_1775
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Entry
PSPTO_1775 CDS
T00118
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_1775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_1775
03009 Ribosome biogenesis [BR:
pst03009
]
PSPTO_1775
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPTO_1775
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPTO_1775
Ribosome biogenesis [BR:
pst03009
]
Prokaryotic type
rRNA helicases
PSPTO_1775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AAO55295
UniProt:
Q885Q6
LinkDB
All DBs
Position
1943997..1945685
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AA seq
562 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPTKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNNAPRGDRPERSGSSDRGDRGDRPERERRAPVP
LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL
LTKLKDTRVAGKQLKLRRYRED
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagct
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgatcatt
cttgccggtcacgacatgattggtcaggcgcagaccggtacgggtaaaaccgccgcgttc
gcactgcctatcctgcatcgcatcgatccgaccaagcgtgagccgcaagcactgattctg
gccccgacccgcgagctggcccttcaggttgccaccgcgttcgagacctacgccaaacaa
atgccgggcgtgactgtcgttgcagtctacggcggcgcgccgatgggccctcagctcaag
gccatccgcaacggcgcacagatcgttgtcgccacaccgggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgccagaccgtactgttctcggccactctgccacagtcgatccgtgccatcgccgaacgc
catctgcgcgatccgaagcacgtgaaaatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaaaacctcggctgtattgagcctgctg
gaagttgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggac
ctggcaagcgcccttgaagccaaaggctacaaggccgctgcactgaacggcgacatcgcc
cagaaccagcgcgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggtcttgacgttccacgtatcacccacgttttcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcaggt
cgcgaaggccgtgcgttgctgctggtcactcctcgcgagcgtcgcatgctgcaagtgatc
gagcgtgtgaccggtcagaaggttgcggaagtccgcctgccggatgcccaggccgttctg
gatgcccgcatcaagaaactgaccaacagcctggcgccgctggttgctgatgccgaatcg
actcatggcgatctgctggatcgtctgactgccgacatcggttgcagcccgcgtgccctc
gctgctgcactgctgcgcaaggctaccaacggtcaggctctgacccttgcagccatcgag
cgtgaccgtccgctggttccgaacaacgcccctcgcggtgatcgtccagagcgtagcggt
agcagcgatcgtggtgaccgtggcgatcgtcctgagcgtgagcgtcgtgcgccggttcca
ttggccgaaggtcgtgctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcc
aagaacctgctgggtgcaatccttaacgaaggcggcctggcccgcgaagcgatcggccgt
atccaggtccgtgacagcttcagcctggtcgagctgccggaagatggccttgagcgtctg
ctgaccaaactcaaggacacccgtgttgcgggcaagcagctcaagctgcgtcgctatcgc
gaagactga
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