Pseudomonas syringae pv. tomato DC3000: PSPTO_2201
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Entry
PSPTO_2201 CDS
T00118
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst00010
Glycolysis / Gluconeogenesis
pst00020
Citrate cycle (TCA cycle)
pst00260
Glycine, serine and threonine metabolism
pst00280
Valine, leucine and isoleucine degradation
pst00310
Lysine degradation
pst00380
Tryptophan metabolism
pst00620
Pyruvate metabolism
pst00630
Glyoxylate and dicarboxylate metabolism
pst00640
Propanoate metabolism
pst00670
One carbon pool by folate
pst00785
Lipoic acid metabolism
pst01100
Metabolic pathways
pst01110
Biosynthesis of secondary metabolites
pst01120
Microbial metabolism in diverse environments
pst01200
Carbon metabolism
pst01210
2-Oxocarboxylic acid metabolism
pst01240
Biosynthesis of cofactors
Module
pst_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pst_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
pst_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
pst_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
PSPTO_2201 (lpdA)
00020 Citrate cycle (TCA cycle)
PSPTO_2201 (lpdA)
00620 Pyruvate metabolism
PSPTO_2201 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
PSPTO_2201 (lpdA)
00640 Propanoate metabolism
PSPTO_2201 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
PSPTO_2201 (lpdA)
00280 Valine, leucine and isoleucine degradation
PSPTO_2201 (lpdA)
00310 Lysine degradation
PSPTO_2201 (lpdA)
00380 Tryptophan metabolism
PSPTO_2201 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
PSPTO_2201 (lpdA)
00670 One carbon pool by folate
PSPTO_2201 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pst04147
]
PSPTO_2201 (lpdA)
Enzymes [BR:
pst01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
PSPTO_2201 (lpdA)
Exosome [BR:
pst04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
PSPTO_2201 (lpdA)
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Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_binding_2
FAD_binding_3
HI0933_like
GIDA
FAD_oxidored
AlaDh_PNT_C
NAD_binding_8
3HCDH_N
DAO
Thi4
2-Hacid_dh_C
Amino_oxidase
UDPG_MGDP_dh_N
Lycopene_cycl
XM1_gp53_minor_capsid
Motif
Other DBs
NCBI-ProteinID:
AAO55717
UniProt:
Q883Z5
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All DBs
Position
2423740..2425176
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AA seq
478 aa
AA seq
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MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKLALGGTCLNVGCIPSKAL
LDSSWKFYEAKNGFAVHGISTSEVAIDVPAMIGRKSTIVKGLTGGVASLFKANGVTTLQG
HGKLLAGKKVELTAADGTVEIIEADHVILASGSRPIDIPPAPVDQKVIVDSTGALEFQQV
PQRLGVIGAGVIGLELGSVWARLGAQVTVLEALDKFIPAADEAVSKEALKTFTKQGLDIK
LGARVTGSKVNGEEVVVSYTDAAGEQSITFDRLIVAVGRRPVTTDLLASDSGVDLDERGF
IYVDDYCTTSVPGVYAIGDVVRGLMLAHKASEEGIMVVERIKGHKAQMNYNLIPSVIYTH
PEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTGGFVKIIADAKTDRVLGVHVI
GPSAAELVQQGAIAMEFGSSAEDIGMMVFSHPTLSEALHEAALAVNGGAIHIQNRKKR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagaaattcgacgtggtagtgattggcgcaggccctggcggctatgttgccgcc
atcaaggcagcgcaacttggtctcaagactgcctgcatcgagaaataccaggacaaggag
ggcaaactggccctcggtggtacctgcctgaacgtaggttgcattccatccaaggcgctg
ctcgacagctcctggaaattctacgaagccaagaacggtttcgcagtgcacggcatttcg
acatctgaagtggccatcgacgtgcccgccatgatcggtcgcaagtcgaccatcgtcaaa
ggcctgaccggcggcgtcgccagcctgttcaaagccaacggcgtgaccaccctgcaaggc
cacggcaaattgctggccggcaagaaagtcgagctgacagcggccgacggcactgttgaa
atcatcgaagcggaccacgtgatccttgcttcgggctcgcgtcctatcgacattccgcca
gctccggttgatcagaaagtcatcgttgattccaccggtgcgctggaatttcaacaggtt
ccacagcgtctgggcgttatcggcgcaggcgtaatcggtctggagctgggttcggtctgg
gctcgcctcggcgctcaggtcactgttctggaagcgctggacaagttcatcccggccgct
gacgaagccgtttccaaggaagcgctgaaaaccttcaccaagcagggcctggacatcaaa
ctgggcgctcgcgtgaccggctccaaggtcaacggcgaagaagtggtggtcagctacacc
gacgcagcaggcgagcagtcgatcacgttcgaccgtctgatcgttgctgtcggacgtcgt
cctgtgaccaccgacctgttggcctccgacagcggtgtcgacctcgacgagcgcggtttc
atctacgtcgatgactactgcaccaccagcgttccgggcgtctatgccatcggtgacgtg
gttcgcggcctgatgctggcgcacaaggcctcggaagagggcatcatggttgtcgagcgc
atcaagggtcacaaggcccagatgaactacaacctgatcccgtcggttatctacacccac
ccggaaatcgcgtgggtaggcaagaccgaacagaccctcaaggccgaaggcgttgaagtc
aatgtcggtacgttcccgttcgcagccagcggccgtgccatggcagccaacgacaccggt
ggtttcgtcaagatcattgccgatgccaagaccgaccgcgttctgggtgttcacgttatt
ggcccgagcgctgccgaactggtacagcagggcgccatcgcgatggaattcggcagcagc
gcagaggacatcggcatgatggtcttctcgcacccgactctgtccgaggcattgcatgaa
gctgcactggctgtgaatggcggcgccatccacattcagaatcgcaagaaacgctaa
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