Pseudomonas syringae pv. tomato DC3000: PSPTO_3036
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Entry
PSPTO_3036 CDS
T00118
Name
(GenBank) conserved hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PSPTO_3036
09124 Replication and repair
03420 Nucleotide excision repair
PSPTO_3036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pst03021
]
PSPTO_3036
03036 Chromosome and associated proteins [BR:
pst03036
]
PSPTO_3036
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_3036
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PSPTO_3036
Transcription machinery [BR:
pst03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PSPTO_3036
Chromosome and associated proteins [BR:
pst03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PSPTO_3036
DNA repair and recombination proteins [BR:
pst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PSPTO_3036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AAO56526
UniProt:
Q880W4
LinkDB
All DBs
Position
complement(3413324..3415609)
Genome browser
AA seq
761 aa
AA seq
DB search
MLSDPPARYAVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTVASRRGADYQAELAL
SGDYHELTVRGRADGYDAGRNQLEEVKTYRGELDAMPANHRQLHWAQVKVYGWLLCQRLQ
LEEVTLALVYFNIVSEQETLIREPFSAATLRRFFEQQCTIFLSWARQELAHTQVLHQTLG
SLKFPHASFRTGQRALAESVYKAVSTGCCLMAQAPTGIGKTVGTLFPLLKAAPVQKLDKI
FFLTAKTPGRRLALDALEVIRHSAPELRLRVLELVARDKACEHPDKACNADSCPLARGFY
DRLPAARSAALESPWLNQAGVREAALLHQVCPYYLSQELARWADVVIADYNYYFDLSALL
FGLGQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKALIQNAPDPVKKALQRVDRQW
NALHKVQAGAYHAYPAGPDKFLNSLNLCISTIGDHFNEHPQAVDGTLQGFYLEAIGFARI
AELFDEHFIFDITRRDAGGKRVLSRLSLRNVVPARFIRPRLSAARSTVLFSATLNPRHYY
TDWLGLPANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPIVELMATQFAARPGN
YLAFFSSFDYLLQVAELMARTHPHITLWQQARGMAEGERHAFLERFTLSSQGIGFAVLGG
AFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYDYTYLYPGVQKVVQA
AGRVIRSQSDSGVVMLIDDRFAERKVAQLFPAWWRPETVDG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcgatccgcctgcacgttatgcagtggcagtgcgcgctttgtgcgagttcacg
gccaaggtgggtgatctcgatctgcgtttcacgccatcgccaacggcgcaggaagggatt
gccgggcatcgcacagtcgcgtcgcgtcgtggtgccgattatcaggccgagctggcgctg
agcggcgattaccatgagctgacggtgaggggcagggcagacggctacgacgcaggccgc
aaccagttggaagaagtgaaaacctatcgcggcgagctggacgccatgcccgccaaccac
cgtcagttgcattgggcgcaggtgaaggtgtacggctggctgctctgccagcgtctgcaa
cttgaagaagtgacgctggcgctggtgtatttcaacattgtcagcgagcaggaaaccctg
attcgtgagccgttcagcgctgcgaccctgcgacggtttttcgagcagcagtgcacgata
ttcctcagctgggcgcggcaggagctggcgcacactcaggtgttgcaccagacgctgggc
agcctgaaattcccccatgcctcgtttcgtaccggccagcgagcgcttgccgagtcggtg
tacaaggcggtgagcacgggctgttgcctgatggcccaggcaccgaccggcatcggcaag
accgtgggcacgctgtttccgttgctcaaggcggcgcctgtccagaagctcgacaagatt
ttcttcctgaccgccaagacgccggggcggcggctggcgctggatgcgctggaagtcatc
aggcacagtgcgcctgaactcaggctgcgggtgctggagttggtggcgcgggacaaggcc
tgcgagcatccggacaaagcctgcaacgcagattcctgcccgctggcccgtggcttttac
gaccgtctgcctgccgcacgctcggcggcactggagtcgccctggctgaatcaggctggc
gtgcgcgaggccgccttgctgcatcaagtctgtccgtattacctgagccaggagctggcg
cgctgggccgatgtggtcatcgccgactacaactattacttcgacttgagcgcgctgttg
tttggccttggccagctcaatcaatggcgggtggcggtactggtcgatgaagcgcacaac
atggtcgagcgggcgcggcagatgtacagcgcaagcctcgatcagagtcaactgaaagcg
ttgattcagaacgcgcccgacccggtgaaaaaagccctgcagcgcgtggatcggcaatgg
aatgcactgcacaaggtgcaggccggcgcctatcatgcttacccagcgggaccggacaaa
ttcctcaacagtctcaacctgtgcatctcgaccatcggtgaccatttcaacgagcacccg
caggcggtagatggcacgttgcaggggttttatctggaagccatcggctttgcgcgcatt
gccgagctgttcgacgaacacttcattttcgatatcactcggcgcgatgccggtggcaag
cgcgtcctgtcgcgcctgagcctgcgcaacgtggtgccggcacgcttcattcgcccgcgc
ctgagcgctgcacgcagcaccgtgctgttttccgcgacactcaacccacggcattactac
acggactggctcgggctaccggccaatacggcctggatcgacgtcgagtcgccgttccat
cacgatcaactggacgtgcgcatcgtcagccgcatttctacccgttttactcatcggcag
gcgtctctggcgccgattgtcgaactgatggctacgcagttcgcagcccggccgggcaac
tatctggcgttcttcagcagctttgattacctgttacaggtggccgaactgatggcacgc
acgcatccgcatattaccctctggcagcaggcgcgaggcatggccgaaggtgagcgccat
gcgtttctcgaacgtttcaccctgagcagccagggcatcggctttgcggtgctgggcggt
gcttttggcgaaggcatcgacttgccgggggctcgtctgatcggcgcattcattgccacc
ctggggctgccgcagctcaacccggtcaatgagcagttcaagcaacgcatggctgcgctg
ttcggcgcgggctacgattacacctacctttaccccggtgtgcagaaggtcgtgcaggcg
gcggggcgggtgattcgcagccagagtgacagcggcgtggtgatgctgatcgatgaccgt
tttgccgaacgcaaggtggcgcaactgttccccgcgtggtggcggcctgaaaccgttgac
ggctga
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integrated database retrieval system
