Pseudomonas syringae pv. tomato DC3000: PSPTO_3549
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Entry
PSPTO_3549 CDS
T00118
Symbol
aefR
Name
(GenBank) transcriptional regulator AefR
KO
K19736
TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pst03000
]
PSPTO_3549 (aefR)
Transcription factors [BR:
pst03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
PSPTO_3549 (aefR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TetR_C_7
TetR_N
TetR_C_11
TetR_C_6
TetR_C_24
wHTH_Par
HTH_22
HTH_11
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AAO57024
UniProt:
Q87Z81
Structure
PDB
PDBj
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All DBs
Position
4005294..4005896
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AA seq
200 aa
AA seq
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MRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQR
LWNCAPPQSEVVYRPLVSLREQLLELLWGKMRNLTDSSFLDLARVVVGATIHSPERAQVW
LARINEREETFSAWIRAAQKDGRLKPVDPGFAATQMHALLKSFAFWPQVTFNAALLTPQE
QSNVVESALNMFLGWYEIPG
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcaccgatcagaaacgcgagtccatcgtccaggcggccattgccgagtttggc
gatcgtggtttcgagatcaccagcatggaccgtatcgccgcgcgggcggaggtttccaaa
cgcacggtgtacaaccactttcccagcaaggaagaactgttcgccgaaatgcttcagcgc
ctgtggaactgtgctccgccgcaatcggaggtggtttatcggccgctcgtcagcctgcgc
gagcaactgctggaattgctctggggcaagatgcgcaacctcactgacagcagttttctg
gaccttgcgcgggtagtagtaggtgccacgatacactcgccggaacgtgctcaagtgtgg
ctggcgcgcatcaacgagcgcgaagaaaccttcagcgcctggattcgcgccgcgcaaaag
gacggccgcctgaaacccgtcgatccaggctttgcagcgacgcagatgcacgccctgctc
aagtcgttcgcattctggccgcaagtaaccttcaatgccgcgttgctcaccccgcaagaa
cagagcaatgtcgtcgagtcagccctgaacatgttcctcggctggtacgaaatacccggt
tga
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