Pseudomonas syringae pv. tomato DC3000: PSPTO_3766
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Entry
PSPTO_3766 CDS
T00118
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_3766 (sbcC)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPTO_3766 (sbcC)
Archaeal homologous recombinant proteins
PSPTO_3766 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
Snapin_Pallidin
nSTAND3
MMR_HSR1
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AAO57235
UniProt:
Q87YM9
LinkDB
All DBs
Position
4264401..4268045
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWENNRARDNAT
KKLQASRQTLTDLDSEQILSNHSKREFEQLIESRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKALTTQASNIVPLGPEQLVELEQRF
SDAQQHLKTHQAQQRQLELKQQWLIELHRLGDEQLAAQEALNSAQQTWDQQSGERQTLGQ
LERLGPQRHRFARRTTLNAQLDPLAEQIRQHQAQHTSLQGQQQQLETHRAQAHTSLLDAQ
QQHGSAKPLLQQAFDAQNTLNHLAQELTKACDLHQHTGQLCAEGQASLQTLLDQQQQVAQ
RLERIAEQLQRSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQRAGVADQQL
DEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELTRLWASQQDVDRQLA
DLTRQQQSAQQQREQLNSEGLRVRDELAVAEQTLTVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSVEHPWHQPEALLESLTRHDDDEQASAQKAVDLLTEQRNQLREQVGGVIAR
QKELLRQHEQLLERHQALAPDLEAHPLAAQLLDRDADKRDGWLSQQLSQLNEVIARDEQR
QQALLTLQKDAARLQQQLQAATDASQTAARHVAEQLKQLDADQQRLEEELTAFTPLVSPQ
VLEGLRSDASATVMQLEQQITQRLDQLEQQAEEQQEQRERQQKLEKQQIEQQARLQRQSE
LALEVTRLDAQQQASQQALTGLLGEHATAEQWQQALENAIEQARQTESSAAEALQQIHSQ
LIQLAGELKSGQQQQHAIQQELAELDVQISEWRSQHPELDDAALDTLLTYDDAHVDQLRQ
QLQATEKNLEQAKVLLQERDQRLQQHQAQHSDLNDDQQLTADLQTAQEQLAQSEQQCADL
RAELSEDQRRRNANSELQTRIADANSEYLRWARLASLIGSAEGDKFRKIAQAYNLDLLVH
HANAQLKQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIRV
RRQGNGLSTIEVGN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttgccattcgcctgaaaaacctggcctcgctggccgggccgtttgaaatt
gatttcaccgccgagccgctggccagcgccggcttgttcgcgattaccgggcctaccggc
gcgggcaaaagcaccttgctcgatgccctgtgcctggcgctgttcggggcgattccgcgg
ctgagcaatatcggtcagtccaaggtcccggacatcgatggcgacatcaccaccagtgac
ccgcgcaccctgctgcgtcgtggcaccggaagcggttacgccgaggtggatttcatcggt
atcgatcagcgtcgctatcgggcccgctgggaaaacaatcgcgcacgggacaacgccacc
aagaagctacaggccagccgtcagacgctcaccgatctggacagcgagcaaatcctcagc
aaccatagcaagcgggaattcgagcaactgatcgaaagccgtctgggcttgaatttcgag
cagttcacccgcgccgtgatgctcgcccagagcgagttcagtgcctttctaaaagctgat
gacaaggaacgcagcgaactgctggaaaagctgaccaacactgcgatctacagccagttg
ggccggcgcgcctacagcaagagcaaggaagccgaagaagcgctgaaagccctcaccacc
caagccagcaacatcgtcccgctgggcccggagcaactggtcgagctggaacagcgcttc
agcgacgcacagcaacacctcaaaacccatcaagcacaacagcggcagctggaactcaag
cagcaatggctgatcgagctgcatcgtctgggtgacgaacagctcgccgcgcaggaagcg
ctgaacagtgcgcaacagacctgggaccagcaaagcggcgagcggcaaactctcggccaa
ctggagcgtctgggcccgcaacgccatcgctttgcccgccggaccaccttgaacgcccag
ctcgacccgctggccgagcagattcgtcagcatcaggctcaacacacctcgctgcagggc
cagcaacaacagctggaaacccaccgcgctcaggcgcacaccagcctgctggacgcgcag
cagcaacacggcagcgccaaaccgctgttgcaacaggcgtttgatgcccagaacaccctc
aatcacctggcccaggaactgaccaaggcctgcgacctgcatcagcacaccgggcagctt
tgcgctgaaggtcaggccagcctgcaaaccctgctcgaccagcagcaacaggttgcgcag
cgccttgaacggattgccgaacaactgcaacgcagcagcgagctggccccgctggctcag
gcctggaacgcctggcgcgaccgcctgaaatccctgacgctgatcgccaaccgcctcaag
cacgggcacagtgagctgccagcgctgcaacaacgcgctggcgtcgccgaccagcagttg
gacgagcagcgcagcgcgctggaattgctctatcgcgaagccgactgcgaagtcgaggct
gtgaccgagcaggtgcagattcttggcagcctgttgcaggacaaccgtaaacagcaacgc
gcgtttgaagaactgactcgcctgtgggccagccagcaagacgtcgaccgtcagcttgct
gatctgacccggcaacagcaaagtgctcagcagcaacgcgaacagctcaacagtgaaggc
ctgcgggttcgtgacgaactggcagtcgccgagcagaccctgaccgtcacccggcaactg
ctggagcgtcaacgcctggcccgcagcgccagtgtcgaagagctgcgcgtgcagttgcag
gacgaccagccctgcccggtctgcggcagcgtcgagcatccgtggcatcagcccgaagcg
ttgcttgaaagcctcacccggcatgacgacgacgagcaggccagcgcgcagaaagcggta
gacctgctgaccgaacagcgcaatcagttgcgtgaacaggtgggtggcgtgatcgctcgc
cagaaagaactgctgcgccagcacgagcagcttcttgagcgtcatcaggcattggcgccc
gaccttgaagcccatcccctcgccgctcaattgctggaccgcgacgccgataaacgcgac
ggctggctgagccagcaactgagccagttgaacgaagtcatcgcccgtgacgagcagcgt
cagcaggctttgctgaccttgcagaaagacgcggcccgtttgcagcagcagctccaggcc
gcaaccgacgccagccagaccgctgcgcgccatgttgccgagcaactcaagcaactggac
gccgatcaacagcgtctggaagaagaactgacggcgttcacaccgctggtctcgccgcag
gtgcttgaaggcctgcgcagcgacgcatcggctacggtgatgcagcttgagcagcaaatc
acccagcgtctggaccagcttgagcaacaggctgaagaacagcaggaacagcgcgaacgc
cagcagaagctcgaaaagcagcaaatcgagcagcaggcgcgcctgcaacgtcagagcgaa
ctggcgcttgaagtcacccggctcgacgcgcagcaacaggccagccagcaggcactgacc
ggtctgctgggcgagcatgccacggccgagcaatggcagcaggcgctggagaacgccatc
gagcaggccaggcaaaccgaaagctcggccgccgaggccttgcagcagattcacagccag
ttgatccagctggctggcgaactcaaatccggccagcaacagcagcacgccattcagcaa
gagttggccgaactcgacgtgcagatcagtgaatggcgcagtcagcacccggaactggac
gatgccgcgctcgacacgctgctgacctacgatgacgcacacgtcgatcaactgcgccag
caattgcaggcgaccgagaagaacctggagcaggcgaaagtcttgctgcaggaacgtgat
cagcgcctgcaacagcatcaggcgcagcacagcgacctgaacgacgaccagcaactgacc
gccgacctgcaaacggctcaggagcaactggcgcagagtgagcagcagtgcgccgacctg
cgcgccgaactcagtgaagatcagcgtcgccgcaatgccaacagcgaactgcagacgcgt
atcgccgacgccaacagcgaatacctgcgctgggctcgtctggcgtcactgatcggttcg
gctgaaggtgataaattccgcaagatcgctcaggcctacaacctcgatctgctggtgcat
cacgccaatgcgcaactcaagcaactggtgcgccgctaccgcctgaaacgcggtggaagc
atgctcggcctgctggtgatggacaccgaaatgggcgatgaactgcgctcggtgcattcg
ctgtcaggcggggaaacctttctggtctcgctggcgttggcgctgggcctggcgtcgatg
gcctccagcacgctgcgtatcgaatcactgttcatcgacgaaggcttcggcagcctcgac
cctgagtcgctgcaactggccatggacgcactggacggcttgcaggcacagggccgcaaa
gtcggcgttatctctcacgtacaggaaatgcatgagcgaattccggtgcagatcagagtg
cgtcgtcagggcaatgggttgagtacgatcgaggtgggtaactga
DBGET
integrated database retrieval system
