Pseudomonas syringae pv. tomato DC3000: PSPTO_3987
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Entry
PSPTO_3987 CDS
T00118
Symbol
oprD
Name
(GenBank) porin D
KO
K18093
imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst01501
beta-Lactam resistance
pst02020
Two-component system
Module
pst_M00745
Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSPTO_3987 (oprD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PSPTO_3987 (oprD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pst02000
]
PSPTO_3987 (oprD)
01504 Antimicrobial resistance genes [BR:
pst01504
]
PSPTO_3987 (oprD)
Transporters [BR:
pst02000
]
Other transporters
Pores ion channels [TC:
1
]
PSPTO_3987 (oprD)
Antimicrobial resistance genes [BR:
pst01504
]
Gene sets
beta-Lactam resistance modules
Imipenem resistance, repression of porin OprD [MD:
M00745
]
PSPTO_3987 (oprD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OprD
Motif
Other DBs
NCBI-ProteinID:
AAO57446
UniProt:
Q87Y25
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All DBs
Position
4492830..4494176
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AA seq
448 aa
AA seq
DB search
MRVMKWSAIALAVTAASTQLATAAPFVSDQAEAKGFVEGSTLDLKLRNYYYNRDRKNNPA
PGGRSDKDWTQGIWANFSTGYTQGTIGVAAEAFGYGALRLWGPDKYSGSGNLVTDSNGDN
EATQGKFGGAVKFRVSKTELKVGDMQPTSPVFAVGGSRILPQTASGLSLQSSEIAGLDLE
AGHFYSGTSQDDTSHNGSIWATYANGFNGLKANSADFLGGKYAITDGLGVAFYAAKLEDI
WDQYYGNVNYALPLGNDQSLAFDVNLYRTLDEGSSKADSINNTTYSASAAYSFLAAHTVT
VAYQKVDGDTPFDYIGIGDNNRGGDSIFLANSVQYSDFNGPGEKSWQIRYDLNMTPYGVP
GLSFMTRYLNGDNIDGTKVDASSLYANMYGADGKHHETNLEAKYVVQAGPAKDLSFRMRQ
AWHRGNDAQSDGDVNEFRLIVDYPISIL
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagagtgatgaagtggagcgcaatcgcactggccgttacggcagccagcacccaactg
gcaacagcggcacctttcgtcagcgatcaggctgaggccaagggtttcgtcgaaggcagc
acgcttgacctgaagttgcgcaattactactacaaccgtgacagaaagaataatcccgct
ccgggcggccgtagtgacaaagactggactcagggcatctgggccaacttcagcactggc
tacacccaaggcactataggtgtcgccgcagaggccttcggttacggcgccctcagactc
tggggtccagacaagtattcgggctcgggcaacctggttaccgactccaatggcgacaac
gaagcaacacaaggtaaatttggcggtgctgtgaaattccgcgtttcgaagacagagctg
aaagtgggcgacatgcagccgaccagccctgtattcgcagttggcggttcgcgcatactg
cctcagaccgctagcggcctgagcctgcagagcagcgagattgccggtcttgaccttgaa
gctggacatttttactcaggcacaagccaggatgacaccagccacaacggtagcatctgg
gcaacctacgccaatggttttaatggcctgaaagctaatagtgcggatttcctgggcggt
aaatacgcaataaccgacggcctgggcgtagctttttacgcagccaagctcgaagatatc
tgggatcagtactacggcaacgtgaactacgcgctgcctctgggcaatgaccagtccttg
gcgtttgacgtcaacctttatcgcacacttgacgagggtagctccaaagctgactcgatc
aacaacactacgtactcagcttcggcagcctattccttcttggcagcgcacaccgttact
gtcgcgtatcagaaggtcgacggtgacactccattcgactacatcggcatcggcgacaat
aatcgtggtggcgactctatcttcctggccaactccgttcagtactctgacttcaacggc
ccgggcgaaaagtcgtggcagattcgctatgacctgaacatgactccttatggcgttcct
ggcctgagctttatgactcgctacctcaatggtgacaatattgacggtaccaaagtggat
gcctccagcctgtacgccaacatgtacggcgcagacggcaaacaccacgaaaccaacctt
gaagctaaatatgtagttcaggctggcccggcgaaagatctgtccttccgcatgcgtcaa
gcctggcaccgcggcaatgatgctcagtcagacggcgacgtcaacgagttccgcctgatt
gtcgattacccgatctcgatcctgtaa
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