Pseudomonas syringae pv. tomato DC3000: PSPTO_4084
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Entry
PSPTO_4084 CDS
T00118
Name
(GenBank) mannuronan C-5-epimerase, putative
Organism
pst
Pseudomonas syringae pv. tomato DC3000
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HemolysinCabind
Peptidase_M10_C
Pect-lyase_RHGA_epim
He_PIG
Beta_helix
NosD
End_N_terminal
Motif
Other DBs
NCBI-ProteinID:
AAO57541
UniProt:
Q87XU1
LinkDB
All DBs
Position
4594116..4598948
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AA seq
1610 aa
AA seq
DB search
MIFNTKDFGALGDGVTNDTAAIQATIDAAAAAGGGEVVLAAGTYIVSGGEEPSDGCLMLK
SNVTLSGAGMGETIIKLADGSDTKVTGIVRSAYGEETHDFGMNNLTLDGNRDATTGKVDG
WFNGYIPGSDGKDSNVTLDSVEIKDCSGYGFDPHEQTVNMVIKNSVSHGNGLDGFVADYL
SDSVFENNVAYNNDRHGFNVVTSTHDFTLSNNIAYGNGSTGIVVQRGSENIPSPANITIT
GGAVYGNGAEGVLIKLSSQVSVSGLDIHDNGSAGVRIYGSSAVDVFDNTLSNNSLGAPVP
EIIIQSYDDTTGVSGKYFNGSDNLIRGNLITGSDNSTYGVAERNEDGTDRNSIVGNTISH
TSKGLTLVYGDGSFAGDAFPLVTVLGTEANDVITGGAAHELIFGLAGKDTLNGGTGDDIL
VGGAGADKLNGGAGADTFRFDQLTDSYRTATTSATDLLTDFNVSQDRIDLANLGFTGLGS
GKNGTLNISYNATLDRTYVKSLDVDASGNRFELGLTGNLKDTLNASHFIFQRVTEGTAGG
DTLTGTAGNDVINGNAGVDRIDGGAGADTINGGADADTLTGGAGADVFVYSSRLDSYRNY
TAGGPKQSDTIVDFNVAEDRIDLSAIGLRGPGDGSANTLYLSLNGDGSKTYVKTNAVDTT
GNRFEIALEGNLLDKLGASNFIFSSASATNQAPVLNTPLMDQIVTELKPFSYAVQPGSFS
DPDSTALTYSATLADNSALPDWLKFDSKTLTFSGTPGGTASGLYSVLLTASDATGASVAD
SFAINVGNVAPGIITGTESAEALYGTEGNDTLLGLGGDDTLRGDTGADVLNGGAGRDALY
GGADTDTFVYSTLTDSYRDYDASGLTATDTIFDFTPGQDKIDVSALGFLGLGNGENHTLY
MTLNEAGDKTYVKSATSDVEGNRFEIALSGNLINTLTDADFVFGQRESQEILYLPTLGQS
NARLLRMTEDDNQSGTSEMAKDLTRYTDYDVRSQFNDANGDAIDLAVGGSTVVGYSTGTP
EEQRISWWLTDTDQPGQALLRATELLKAQLASLTAIDKVTTGIIWGQGEEAAQEIARATD
KQAAADLYKASTLKVFDYLHAQIGDFTVYLAETGHYQAQAAEARGYPQEKINAIVEGAGY
VRAAQEAIASERSDIKLAVDYTDLPLRYEVNSLVYPDDVWHLHEESAEIVGQRLADFIAD
DLGFRGNASDNNDPAAIFAGGQNEGGNIFGTSDDDTLIGSAGNDILDGDQGADQMTGGDG
NDIYVVDNSLDTVTESNDSPSQVDTVVSSVSWTLGANVENLLLTGVSAIDGTGNALKNVI
TGNSSDNVVDGGAGGDLLKGGDGSDSYYVDDVADRVVETNSDAWVGGVDTVYSALASYTL
GAHLENIAITRTDTANATGNALDNVLYAGAGDNVMGGRDGNDTASYLFASAGVTVALNTS
AQQATGGSGLDTLKGTENLTGSQFADSLTGNKNANVLNGGAGNDTLSGGAGDDVLIGSSG
ADTLIGGTGADRYVFNSIDEVGRDGLRDIINGFKVSEGDKLDFTGFDARPLTDTHDAFTF
IGNSAFSANNTGELRFADGVLYGNVDDNTGADFEIQLTGVQSLQAADVIV
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgatattcaacacaaaagattttggagctttgggcgacggcgtcacgaacgatacagca
gcaattcaggctacgatcgatgcggccgcagcggcggggggtggtgaagtggttctggcg
gcagggacctacatcgtgtccggtggcgaagagccttccgatggctgcctgatgctcaag
agcaacgtcaccctgtcaggtgccggcatgggcgagacgatcatcaaactcgcggacggc
tcggacaccaaagtcaccggcatcgtccgctcggcctacggtgaagaaacccacgacttc
ggcatgaacaacctcacgctggacggtaatcgggacgccaccaccggcaaggtggacggc
tggttcaacgggtacattccgggctctgacggcaaggactcgaacgtcaccctggacagc
gtcgaaatcaaggattgctcgggatacgggttcgacccgcacgagcagaccgtcaatatg
gtgatcaagaacagcgtgtcccacggcaacggcctggacggcttcgtggccgattacctg
agcgacagcgtgttcgagaacaacgtcgcgtataacaacgatcgtcacggcttcaacgtg
gtgaccagcacccacgacttcaccctgagcaacaatatcgcctacggcaatggcagcacc
ggcatcgtggtgcagcgcggcagcgaaaacattccttcccccgccaacatcaccatcacc
ggcggcgcggtctatggcaacggtgccgaaggcgtgctgatcaagctgtccagccaggtg
tcggtcagcggcctggacattcacgacaacggcagcgcgggcgtgcgcatttatggcagt
tccgcggtggatgtctttgataacacgctgagcaacaactccctcggcgcaccggtgccg
gagatcatcattcagtcctatgacgacaccactggtgtctccggcaagtacttcaacggc
agtgacaacctgatccgtggcaacctgatcaccggcagcgacaactctacctacggcgtg
gccgagcgcaacgaagacggcaccgatcgcaacagcatcgtcggcaataccatcagccac
accagtaaaggcctgacgctggtttacggtgatggcagctttgcgggcgatgcgttcccg
ctggtcaccgtgctgggcacagaggccaacgacgttattaccggcggtgcggcacacgag
ctgatcttcggtctggcgggcaaagacacgctcaacggcggcacgggcgacgacattctg
gtcggcggtgccggggccgacaagctgaacggcggcgcgggtgccgatacctttcgcttc
gatcaactgaccgacagctatcgcacggcgaccaccagcgctaccgacctgctcactgac
ttcaacgtcagccaggaccgcatcgatctggcgaacctgggcttcaccgggctgggcagc
ggcaagaatggcacgctgaatatcagctacaacgccaccttggaccgcacctatgtcaag
tctctggacgtcgatgcaagcggcaaccggttcgagctgggcctgaccggcaacctgaaa
gatacactcaatgccagtcacttcatcttccagcgcgtgacggaaggcaccgcaggtggc
gataccctgaccggtactgcgggcaacgatgtcatcaacggcaatgccggcgtggaccgc
atcgatggcggcgcgggggcagacacgatcaatggcggtgccgatgccgacacactgacc
gggggcgcaggtgccgacgttttcgtctacagctcgcgcctggacagctaccgcaattac
accgctggcgggccgaagcagagcgacaccatcgttgacttcaacgtcgccgaagaccgc
atcgacctttccgccattggcctgcgcgggccgggcgatggcagcgcgaacaccctttac
ctgtcgctgaacggcgatggcagcaaaacctacgtcaagaccaatgcggttgacaccacc
ggcaatcgtttcgagatcgccctggaaggcaatctgctcgacaaactcggcgcgtccaac
ttcatcttctccagcgcatcggccaccaatcaggcaccggtgctcaacacgccgctgatg
gaccagatagttaccgaactgaaaccgttctcgtacgccgtgcagcctggtagtttcagc
gacccggacagcaccgcgctgacctacagcgcgacactggcagataacagcgccctgccc
gactggctgaaattcgacagcaagaccctgacattcagcggcacaccaggtggcacagct
tcagggctctattccgtgctgctgacagccagcgacgcgacaggcgcttcggtggcggac
agcttcgcgatcaatgtgggcaacgtcgcaccgggcatcatcaccggcaccgaaagcgcc
gaagcgctttatggcaccgagggtaacgacacattgctgggcctgggtggcgacgacacc
ttgcgcggcgataccggcgccgacgtgctcaacggcggagcgggccgcgacgctttgtat
ggcggcgccgatactgacacgttcgtctacagcacgctcaccgacagctaccgtgactac
gacgcaagcgggctgaccgcgacggacacaatcttcgatttcacccccggtcaggacaag
atcgacgtctccgccttgggctttctggggctgggcaacggagaaaaccacacgctgtac
atgacgctcaacgaggcgggcgacaagacctacgtcaaatccgctacttccgatgtcgaa
ggcaatcgctttgaaatcgccttgagcggcaacctgatcaacaccctgactgacgcagac
tttgtgtttggccaacgtgagtctcaggagattctttatttgccgacgctgggccagtcc
aacgcgcgcctgctgcgcatgaccgaggacgacaaccagtccggcacctcggaaatggcc
aaggacctgacccgctataccgattacgacgtgcgcagccagttcaacgacgccaacggt
gatgccatcgacctggcggtaggcggcagcaccgtcgtcggttactcgaccggcaccccg
gaagagcagcgtatttcctggtggctgaccgataccgatcaacctggccaggcgctgctg
cgtgccaccgagctgcttaaggcgcaactggcgtcgttgacggccatcgacaaagtcacc
accggcattatctggggtcagggcgaagaagccgctcaggaaatagcccgggccactgat
aaacaagctgcggccgacctgtacaaggcatcgacccttaaggtgttcgactacttgcac
gcgcagataggcgacttcacggtgtacctggcagaaaccggccattaccaggcacaggca
gccgaagcacgcggctaccctcaggaaaaaatcaacgccattgtcgaaggtgcgggttat
gtccgcgccgctcaggaagccatcgccagcgaacgcagcgacatcaaactggcggttgac
tacaccgacctgcccttgcgttacgaggtcaactcgctggtttacccggatgacgtctgg
cacctgcatgaagagtcggcagagatcgtcggtcagcgactggccgacttcattgccgac
gacctgggtttcaggggcaacgccagtgacaacaatgacccggcggccatttttgcgggc
ggccagaacgaaggtggcaacattttcggcaccagtgacgatgacacgctgatcggcagc
gccggcaacgacatactggacggcgatcagggtgcagaccagatgacgggaggcgatggc
aacgacatctatgtggtcgacaactcgctggataccgtcaccgagagcaatgactcgccg
tcgcaggtcgataccgtggtgtcgtctgtcagctggacgctgggggccaatgtcgaaaat
ctgctgcttaccggcgtgtctgccatcgacggcaccggcaatgcgctgaaaaacgtgatc
acgggtaacagcagcgacaacgttgtggacggcggagccggaggcgatttgctgaaaggt
ggcgacggctccgacagctattacgtcgatgacgtggcagaccgcgtggtcgagaccaac
agcgatgcgtgggtcggcggcgtcgatacggtgtacagcgcgctggcgagttatacgctg
ggggcccatctggaaaacatcgcgatcacccgtacagacactgccaacgccaccggcaat
gccttggataacgtgctctacgcgggcgctggcgacaatgttatgggtgggcgtgacggc
aatgacacggcgtcgtacctgttcgccagcgccggggtcacggtcgcgctgaacaccagc
gcccagcaagccaccggcggttctggcctggacaccctgaaaggcactgaaaacctgacc
ggcagccagtttgccgactcgctgacgggcaacaagaacgccaacgtgctgaacggtggc
gctggcaacgatacgttgtccgggggcgcaggcgacgatgtgttgatcgggagttccggt
gcggacactttgatcggtggcaccggggcggatcgctatgtgttcaacagcatcgacgag
gtgggccgtgacggcttgcgcgacatcatcaatggtttcaaggtgagcgaaggcgacaaa
ctggatttcacaggcttcgatgcccgaccgcttactgatacccacgatgcgttcacgttc
atcggcaactcggcgttcagcgccaacaacaccggcgagcttcgctttgccgatggcgtg
ctgtacggcaatgtcgatgacaacaccggggcggacttcgaaatccagctaacgggtgtg
cagagcctgcaggcggctgacgtcatcgtctga
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