Pseudomonas syringae pv. tomato DC3000: PSPTO_4104
Help
Entry
PSPTO_4104 CDS
T00118
Name
(GenBank) ATP-dependent helicase hepA, putative
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pst03021
]
PSPTO_4104
Transcription machinery [BR:
pst03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PSPTO_4104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAO57560
UniProt:
Q87XS2
LinkDB
All DBs
Position
4623994..4626840
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG
DVITHFENWKMTVREVDDVDGLLVYHGLNAQNEVVTLPETQLSNFIQFRLATDRLFAGQI
DQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDA
GNPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEEKASREYSLVEQL
AEVIAGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDK
GKLSAAAQKTIHGFLGAEGDTLLAAVNAGDDEAKARLIRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSQSDASEEERWWRFDPRVEWLIDT
LKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPFLETSP
QARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESGDDDEWQSLIDEARSERERLE
SELHTGRDRLLELNSGGAGEGEALVEDILEQDDQFSLPIYMETLFDAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVSF
NTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPKHAERVAEAQRRLAADTEEEL
ARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagccgagctgggt
ttaggcaccgttctggcacaggacggccgcttgttgaccgtgctctatccggccactggc
gagacgcgccagtacgcactgcgtaatgcgccgctgacccgcgtgcgcttctcgccgggc
gatgtgatcacgcacttcgaaaactggaagatgaccgttcgcgaagtcgacgatgtcgac
ggcctgctggtgtaccacggcctgaacgcgcagaacgaagtggtcacgctgccggaaacc
caactgtcgaacttcatccagttccgcctggcgaccgaccgtctgttcgcgggccagatc
gaccagttgtcgtggttttcgctgcgctacaacacgcttgagcacaccagccgccagttg
cagtcctcgctttggggcctgggtggcgtgcgtgcgcaacctattgcgcaccaattgcac
atcgcccgggaagtcgccgaccgcatcgcgccacgcgtattgctggccgacgaagtgggt
ttgggcaagaccatcgaagccggcctggtgattcatcgccagttgctgtcggggcgcgcc
aaccgcgtgctgattctggttccggaaaacctccagcaccagtggctggtggagatgcgc
cgccgcttcaacctgcaggttgcgctgttcgacgccgaacgcttcatggaaagcgatgcc
ggcaacccgtttgaagacacccaactggcgctggttgcgctggaatggctggtcgaagac
gaaaaggcgcaggacgccctgttcgcggcgggctgggacctgatggtggtcgacgaagcg
caccacctggtctggcacgaagaaaaggccagccgtgaatactcgctggtcgaacaactg
gccgaggtcattgccggcgtactgctgctgaccgcaacgccagaacaactgggccaggac
agccacttcgcccgcctgcgcctgctcgacccgaaccgtttccacgacctgaaagccttc
cgcgccgagagcgaaaactatcgcccggtggctcaggccgttcaggaactgctcgacaag
ggcaaattgtccgctgcggcgcagaagaccatccacgggttcctcggtgccgaaggtgac
accttgctcgcggcggtcaatgccggcgacgacgaagccaaggcacgtctgattcgcgaa
ctgctggaccgtcacggcaccggccgcgtgctgtttcgcaacacccgcgccgccgtgcag
ggcttcccggagcgcaaactgcatcaatacccgctgccctgccctgttgaataccttgaa
ctgccggttggcgagcacgccgatctttaccccgaagtgagtttccagtcgcagtcggat
gccagcgaagaggagcgctggtggcgctttgacccacgcgtcgaatggctgatcgacacg
ctcaagatgctcaagcgcgtcaaggtgctggtcatctgtgctcacgctgaaaccgccatg
gacctggaagacgcgctgcgcgtgcgctccggcattccggccacagtgttccacgaaggc
atgaacatccttgagcgcgaccgcgccgcagcctattttgcggacgaagagtttggcgct
caggtactgatctgttcggaaatcggcagcgaaggccgcaacttccagttttcccaccat
ctggtcctgttcgacctgccgtcgcacccggacctgctggaacagcgcatcgggcgtctg
gaccggatcggccagaaacacgtcatcgagctgcacgtgccattcctggagaccagcccc
caggcgcgtctgttccagtggtatcacgaagcgctcaatgcgttcctcaacacctgcccg
accggtaacgcgctgcagcatcagtttggaccgcgcctgttgcccttgctggaaagcggt
gacgacgatgagtggcagagcctgatcgatgaagcccgcagcgagcgcgagcgtctggaa
agcgagctgcacactggccgcgaccggctgctggagctcaactccggtggtgctggcgaa
ggtgaggcactggttgaggatattctcgaacaggacgatcagttcagcctgccgatctac
atggaaaccctgttcgacgcctttggcatcgacagcgaagaccactcggaaaatgccctg
atcctcaagccgagcgagaagatgctcgacgccagcttcccgctgggcgacgacgaaggc
gtgaccatcacgtacgaccgcaatcaggcactgtctcgtgaagacatgcagttcatcacc
tgggaacacccgatggtccagggcggcatggacctggtgctgtccggttcgatgggcaac
acggcggtggcactgatcaagaacaaggcgctcaagccgggtactgtgctgctggagctg
atttacgtcagcgaagtggtcgcgccgcgctcattgcaactgggacgctacctgccgcct
gctgcactgcgctgcctgctcgacgcaaatggcaacgatctgtcgagccgtgtctcgttc
aataccctgaacgatcagcttgaaagtgtgccacgcgccagcgccaacaagttcatccag
gcgcagcgtgatcagctgaccccgaggatcaacgcaggcgaagagaaaatcactcccaag
cacgctgaacgcgtggccgaagcacaacgccgtctggcagccgacaccgaagaggaactg
gcacgtctgaccgctttgcaggcggtcaaccctaccgtgcgtgacagcgaactggtcgcc
ttgcgcactcagcgcgaacaaggtctggcgatgcttgaaaaagccgcgctgcgccttgag
gcgattagggtactggttgcgggttga
DBGET
integrated database retrieval system
