Pseudomonas syringae pv. tomato DC3000: PSPTO_4468
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Entry
PSPTO_4468 CDS
T00118
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_4468 (cafA)
03009 Ribosome biogenesis [BR:
pst03009
]
PSPTO_4468 (cafA)
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSPTO_4468 (cafA)
Ribosome biogenesis [BR:
pst03009
]
Prokaryotic type
rRNA processing factors
PSPTO_4468 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
DUF7866
Motif
Other DBs
NCBI-ProteinID:
AAO57917
UniProt:
Q87WS5
LinkDB
All DBs
Position
complement(5032433..5033890)
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AA seq
485 aa
AA seq
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MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFIDI
GLDRAAFIHASEISMREGPAVESIASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRY
LVYMPRTAHVGISLKIEDEAERERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILM
DIRYLRRLWDQIGDQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQ
FVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTID
VNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTL
EKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCVGRGKLKTPETICYEI
FREILREARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQY
DVVLL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagattctgatcaacatcaccccgatggaatcgcgggtggcagtggtagaa
aacggtgtactgcaagaggtgcacgtcgaacgcacccagcgtcgcggcattgtcggcaac
atctacaaaggcaaggtggtgcgggtgttgcctggcatgcaggcggcgttcatcgacatc
ggtctggatcgcgccgcattcattcatgcatcggaaatttccatgcgcgaagggcctgcc
gtcgagagcattgcgtcgctggtgcatgacggccagagtctggtggtgcaggtcaccaaa
gacccgattggcagcaaaggcgcacgcctgaccacgcagctgtcgattccgtcgcggtat
ctggtgtacatgccacgtactgcccacgtcgggatttctctgaagatcgaagacgaggcc
gagcgggagcgactgaaaaaagttgtcagcgattgtgtcgcccaggaaggcatcaaagag
gccggtggcttcattttgcgcaccgctgcggaaggcgccggtgccgacgaaatcctcatg
gacattcgttatctgcgcaggctctgggaccagatcggcgatcagatcaagaccgtcagc
ccacccaccgtgatctacgaagacctgggcctggcattgcgtaccttgcgtgacctggtc
agcccgcgaatcgaaaaaatccgcattgactcacgggagacgtttcagaaaaccacacag
ttcgtggctgaactgatgcctgaaatcgccgaccgtcttgagcattacccgggcgagcgg
ccgattttcgatctgtacggcgtcgaagacgaaatccagaaagccctggagcgcaaggtg
ccgctcaagtccggcggttatctggtgatcgatccggccgaggcgatgagcaccatcgac
gtcaataccggtgcgtttgtcgggcatcgcaacctggaagaaaccattttcaagaccaac
ctggaggcggcgacagccatcgcccgccagctgcgtctgcgcaatctgggcggcatcatc
attatcgatttcatcgacatggaagacggtgaacaccagcgtcaggtgctgcgcacgctg
gaaaaacagctggagcgcgatcacgccaagaccaacatcatcggtattaccgagctgggt
ctggtgcaaatgacgcgcaagcgcacccgcgaaagtctcgagcaggtgctgtgcgagccc
tgccattgctgcgtgggccggggcaagctgaaaaccccggagaccatctgttacgaaatc
ttccgggaaatcctgcgcgaagccagggcctatcaggcagtgggttatcgcgttctggcc
aatcagcgcgtggtggaccgcttgctcgacgaagagtcgggcaacgtggctgagctggag
agctttattggccggaccatccgttttcaggtagaaaccatgtactcgcaggaacaatac
gacgtggtgctgctctga
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