KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_4468
Entry
PSPTO_4468        CDS       T00118                                 
Symbol
cafA
Name
(GenBank) ribonuclease G
  KO
K08301  ribonuclease G [EC:3.1.26.-]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:pst00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pst03019]
    PSPTO_4468 (cafA)
   03009 Ribosome biogenesis [BR:pst03009]
    PSPTO_4468 (cafA)
Messenger RNA biogenesis [BR:pst03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PSPTO_4468 (cafA)
Ribosome biogenesis [BR:pst03009]
 Prokaryotic type
  rRNA processing factors
   PSPTO_4468 (cafA)
SSDB
Motif
Pfam: RNase_E_G S1 RNase_E_G_Thio DUF7866
Other DBs
NCBI-ProteinID: AAO57917
UniProt: Q87WS5
LinkDB
Position
complement(5032433..5033890)
AA seq 485 aa
MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFIDI
GLDRAAFIHASEISMREGPAVESIASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRY
LVYMPRTAHVGISLKIEDEAERERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILM
DIRYLRRLWDQIGDQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQ
FVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTID
VNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTL
EKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCVGRGKLKTPETICYEI
FREILREARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQY
DVVLL
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgagtgaagagattctgatcaacatcaccccgatggaatcgcgggtggcagtggtagaa
aacggtgtactgcaagaggtgcacgtcgaacgcacccagcgtcgcggcattgtcggcaac
atctacaaaggcaaggtggtgcgggtgttgcctggcatgcaggcggcgttcatcgacatc
ggtctggatcgcgccgcattcattcatgcatcggaaatttccatgcgcgaagggcctgcc
gtcgagagcattgcgtcgctggtgcatgacggccagagtctggtggtgcaggtcaccaaa
gacccgattggcagcaaaggcgcacgcctgaccacgcagctgtcgattccgtcgcggtat
ctggtgtacatgccacgtactgcccacgtcgggatttctctgaagatcgaagacgaggcc
gagcgggagcgactgaaaaaagttgtcagcgattgtgtcgcccaggaaggcatcaaagag
gccggtggcttcattttgcgcaccgctgcggaaggcgccggtgccgacgaaatcctcatg
gacattcgttatctgcgcaggctctgggaccagatcggcgatcagatcaagaccgtcagc
ccacccaccgtgatctacgaagacctgggcctggcattgcgtaccttgcgtgacctggtc
agcccgcgaatcgaaaaaatccgcattgactcacgggagacgtttcagaaaaccacacag
ttcgtggctgaactgatgcctgaaatcgccgaccgtcttgagcattacccgggcgagcgg
ccgattttcgatctgtacggcgtcgaagacgaaatccagaaagccctggagcgcaaggtg
ccgctcaagtccggcggttatctggtgatcgatccggccgaggcgatgagcaccatcgac
gtcaataccggtgcgtttgtcgggcatcgcaacctggaagaaaccattttcaagaccaac
ctggaggcggcgacagccatcgcccgccagctgcgtctgcgcaatctgggcggcatcatc
attatcgatttcatcgacatggaagacggtgaacaccagcgtcaggtgctgcgcacgctg
gaaaaacagctggagcgcgatcacgccaagaccaacatcatcggtattaccgagctgggt
ctggtgcaaatgacgcgcaagcgcacccgcgaaagtctcgagcaggtgctgtgcgagccc
tgccattgctgcgtgggccggggcaagctgaaaaccccggagaccatctgttacgaaatc
ttccgggaaatcctgcgcgaagccagggcctatcaggcagtgggttatcgcgttctggcc
aatcagcgcgtggtggaccgcttgctcgacgaagagtcgggcaacgtggctgagctggag
agctttattggccggaccatccgttttcaggtagaaaccatgtactcgcaggaacaatac
gacgtggtgctgctctga

DBGET integrated database retrieval system