Pseudomonas syringae pv. tomato DC3000: PSPTO_4486
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Entry
PSPTO_4486 CDS
T00118
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_4486 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_4486 (pnp)
03016 Transfer RNA biogenesis [BR:
pst03016
]
PSPTO_4486 (pnp)
Enzymes [BR:
pst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSPTO_4486 (pnp)
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSPTO_4486 (pnp)
Transfer RNA biogenesis [BR:
pst03016
]
Prokaryotic type
tRNA degradation factors
PSPTO_4486 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
OB_RRP5_4th
KH_PNO1_2nd
S1_2
Motif
Other DBs
NCBI-ProteinID:
AAO57935
UniProt:
Q87WQ8
LinkDB
All DBs
Position
complement(5052402..5054507)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA
TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGEEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaagtttcagttcggtcaatcgaccgtaaccctcgagacaggc
cgtatcgcccgtcaagcctctggcgcagtattggtcaccgttgacgacgacgtcagcgta
cttgtgactgtggtcggcgccaaacaggctgacgctggcaaaggcttcttccctctgtcc
gtgcactatcaggaaaaaacctacgctgccggcaagattcctggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgtttccagaaggcttcatgaacgaagtgcaggttgtctgcacagtcgtttccacc
agcaagaagatcgatccggacatcgctgcgatgatcggtacttcggctgctctggccatc
tccggtatcccgtttgacggtccggttggcgctgcgcgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaactgcaggcttcgagcctggacatggtcgta
gctggtacttccgaagccgttctgatggttgagtctgaagccaaagagctgaccgaagac
cagatgctgggcgctgtgctgtttgcccacgacgagttccaggtggtcatcaacgccatc
aaggaactggctgccgaagccgccaagcctacctgggactggcagccaaagcctgaagcg
actgcactgctgggcgctatccgtgccgagttcggcgacgcgatctcccaggcgtacacc
atcaccgtcaaagccgaccgctatgcgcgtctgggcgagctgaaagaccaggtcgttgcc
aagctggctgtcgaagaaggcagcccgtctgccggcgaagtcaaagcggctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgatggccgt
gacactcgcactgtccgcccgctgaacatcgaagtcggcgttctgccaaagactcacggt
tcggcactgttcacccgtggcgaaactcaggcgctggttgttgccaccctgggtactgca
cgcgacgcacagctgctcgacacccttgaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgtatgggcggcgcaggtcgtcgc
gagatcggtcacggccgtctggcacgccgcagcgtacaggctatgctgccgggcgctgat
gtgttcccctacaccatccgtgttgtgtcggaaatcaccgagtccaacggttccagctcc
atggcttcggtctgcggcgcttctctggcactgatggacgctggtgttccgatgaaggca
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagaagttcgccattctgacc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaagtagccggtacctcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagctcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcgcgtaacgaattgtcggccaacgctccgaccatgatcgcgatgaag
atcgataccgacaagatccgtgacgtgatcggcaagggtggcgcgaccatccgtgcaatc
tgcgaagagaccaaggcttcgatcgacatcgaagatgacggctcgatcaagatcttcggc
gagtccaaggaagcggctgaagcagcacgtcagcgcgttctgggtatcaccgcagaagca
gagatcggcaagatctacctgggcaaggttgagcgcatcgtcgatttcggcgcattcgtg
aacatcctgcctggcaaggatggcctggtacacatctccatgttgagcgacgctcgcgta
gagaaagtgaccgacatcctgaaagaaggtgaagaggtcgaagtactggtattggacgtg
gacaaccgcggtcgtatcaagctgtcgatcaaagacgtcgccgcagcgaaagcgtcgggc
gtctga
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