Pseudomonas syringae pv. tomato DC3000: PSPTO_4664
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Entry
PSPTO_4664 CDS
T00118
Name
(GenBank) ATP-dependent RNA helicase rhlE, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_4664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_4664
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPTO_4664
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPTO_4664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AAO58110
UniProt:
Q87W90
LinkDB
All DBs
Position
complement(5267751..5269079)
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AA seq
442 aa
AA seq
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MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL
QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR
QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMK
KHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKILVA
TDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLSAIE
VLTRQTLERKEEPDFEPEHRVPSTDASGQILKKPKKPKKPKVSSSKRNLGKWVDSGESEP
TPAVKPVRKVPVFNTGPRKKKP
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgcctctcttggcctgatcgaacccttgctgcgcgcccttgaagcgctcggt
taccagacaccgacgcctgtgcagacgcaggcaattcctccggtactggcgggccgcgat
ctgatggcagcggcccagaccggcaccggcaagaccgccggttttgccctgccgctgctg
caacgcctgaccatggaaggcccgaaagtcgcacccaactcgattcgtgcgctggtgctg
gcccccacccgcgagctggccgatcaggttcatgaaagcattcgtcagtacgccgaacac
ctgccgttgagcacgtatgcggcctacggcggtgtgagcatcaacccgcagatgatgaag
ctgcgcaagggcgtggacgtgctggttgcgacgccgggtcgcctgctcgatctgtatcgt
cagaaggcgatcaggttttcccagttgcagaccctgattcttgatgaagccgaccgcatg
cttgacctgggctttgccgaggagctgcgcggcatttatgccgtattgcctaagcagcgt
cagacgctgctgttttccgcgacgttctccgatgagattcgtctgctggccgcgcagatg
ctcaatgacccgctgaccatcgaagtcagcccgcgcaatgtcgcggcgtcttcggtcaag
caatgggtcgtgactgtggacaagaagcgcaaggcggatctgttcatccacctgatgaag
aagcatcgttggggccaggtgctggtgttcgccaagacccgcgtgggcgtcgatcagttg
gtggaccgtttgcaggggttgggcctgaacgccgacggcattcatggcgacaaaccacag
gccactcgtcagcgtgcgctggaccgtttcaagagcaacgatgtgaagattctggtcgcc
accgacgtggcggctcgcggtctggatatcgacgacctgccgaccgtggtcaacctggac
ctgccgatcgtggccgaggattacattcaccgtattgggcgcaccggtcgtgcgggccag
accggtgaggctatttcgctggtgtgtgccgatgaagtggaactgctgtcggccatcgaa
gtgctgacccgccagacgctggaacgcaaggaagaacctgacttcgagccggaacaccgg
gtgccgagcactgatgccagcggccagatcctcaaaaagcccaagaagccgaaaaagccc
aaggtatcgagcagcaagcgcaatctgggcaaatgggtagacagcggcgagtccgagcca
acgccggcggtcaagccagtgcgtaaagtgccagtcttcaacaccgggccacgcaagaag
aagccttga
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