Pseudomonas syringae pv. tomato DC3000: PSPTO_4935
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Entry
PSPTO_4935 CDS
T00118
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_4935 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_4935 (vacB)
03016 Transfer RNA biogenesis [BR:
pst03016
]
PSPTO_4935 (vacB)
Enzymes [BR:
pst01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSPTO_4935 (vacB)
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSPTO_4935 (vacB)
Transfer RNA biogenesis [BR:
pst03016
]
Prokaryotic type
tRNA degradation factors
PSPTO_4935 (vacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AAO58363
UniProt:
Q87VK1
LinkDB
All DBs
Position
complement(5590105..5592738)
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AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHETIVGRYFEESGIGFVVPDNPKIQQEV
LVTPGRNSSAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKENRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVP
HLKQLYAMYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAQFLKKHEIPALYRVHDGPPPERLEKPRAFLGELGLSLHKGKDGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RNFRLGDTVEVRVMRVDLDERKIDFEISETAAAATPVGRKRQGHNTAPPAAAAPAEKEKA
PAKSGRRTTSAKESSSEAYRPSDAAAKNAEVRKSRELKKALLADAKGGSKASSGKSDRSG
SAPSSSKPASKHRKGPPKAGSAPAAKSSGARKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagtcgcgagctgatcttgcagcatcttgccgagcgcggttcgccggcaagt
cgcgagcaactggtcgaagaattcggcctgaccactgaagatcaattcgaggccctgcgc
cgtcgccttcgtgcgatggaacgcgacgcccaattgatctacacccgtcgcggcacttac
gcaccggtggacaaactggacctgatcctcggccgtatctccggccatcgtgacggtttt
ggttttctggtccccgatgacggctccgacgacctgttcatgagccctgcacaaatgcgt
ctggtgttcgacggtgatcgggccttggcgcgtgtttccggtcttgaccgccgtggtcgt
cgcgaaggcgtgatcgtcgaagtgatctcgcgggctcatgagaccatcgtgggtcgctat
ttcgaagaaagcggcattggttttgttgtgcccgacaacccgaaaatccagcaggaagtg
ctggtcacgccgggtcgcaacagcagcgccaagattggccagttcgtcgaggtgaaaatc
actcactggccaaccccgcgcttccagccacaaggtgatgtggtcgaagtggtcggcaac
tacatggcgccgggcatggagatcgatgtcgcactgcgcacttacgatatcccgcacgta
tggccagaagccgtcctcaaggaagccgccaagctcaagccggaagttgaagagaaggac
aaggaaaaccgcgtagacctgcgccacctgcctttcgtcactatcgacggcgaagacgct
cgcgacttcgacgatgcggtttattgcgaagccaagccgggcaagctgcgcttgttctcc
gggggctggaagctttacgtggcgattgccgacgtatcgagctacgtgaagatcggttcc
gcgctggatgcagaatcccaggttcgtggcaactcggtgtacttccccgagcgcgtagtg
ccgatgctgcctgagcagttgtccaacggcctgtgttcgctgaacccgcatgtcgatcgt
ctggccatggtctgcgagatgaccatctccaagaccggcgagatgaccgactacgtcttt
tacgaaggcatcattcactcccatgcccgtctgacctacaacaaggtcagcacgattctg
gagcagccgaaaaccgccgaggctaaaagcctgcgcggcgaatacggcgacgtggttccg
cacctcaagcagctttacgcgatgtacaaggtgttgctgggtgcgcgccatgtgcgtggc
gcgatcgatttcgaaactcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccacccgcaacgacgctcacaagctgatcgaagagtgcatgctggct
gccaacgtggccactgcgcagttcttgaagaagcacgaaattcctgcgctgtaccgcgtt
cacgatggtccgccgccggagcgtcttgaaaaaccgcgcgcgtttctgggtgagctgggt
ctgagcctgcacaaaggcaaggacggtcctacgccgaaggattatcaggcgctgcttgaa
accgttcgcgatcgacctgactaccacctgatccagaccgtgatgctgcgttcgttgagc
caggctgtctacagctcggacaacaacggccatttcggtctgaattacgaggcgtacacg
cacttcacgtcgccgatccgtcgttatccggacctgctgacgcaccgtgcgatccgcagc
gttatccgctccaagcaggacaccccgcacgtccgccgtgctggcgctgccacgattccg
aaggcgcgcatctacccgtacgacgacgcgctgctcgaccagttgggcgaacaatgctcg
atgagcgagcgccgtgccgatgaagccacgcgtgatgtggtcaactggctcaagtgcgag
tacatgaaggatcgcgtgggcgagtcgttcccgggcgtgatcacggcggtgaccggcttt
ggtctgttcgtcgagctgaccgacatctatgtcgaaggtctggtccacgtcacggctctg
ccgggtgattactaccatttcgatccgctgcatcaccgccttgccggcgagcgtaccggg
cgcaacttccgcctgggcgatactgttgaagtgcgggtcatgcgtgtcgatctggatgag
cgcaagatcgatttcgaaatttccgagacggcagcggcagcaaccccggtcggtcgcaag
cgtcagggtcacaacactgcgccgcctgctgctgcagcgccggctgaaaaggaaaaggca
cctgccaagtccggtcgccgtacaacgtctgccaaggagagcagttccgaagcgtatcgc
ccaagcgatgcggcggcgaaaaacgcagaagtgcgtaaaagccgcgaactgaaaaaagcg
cttctggctgacgcgaagggtggtagcaaggcgtcgtcgggaaagtctgacaggtcgggt
tctgctccttcgtcgagcaagccggccagtaaacaccgtaaaggcccgccaaaagcgggc
tcggcgccagctgcaaaaagcagtggcgctcgtaaacccaaggccaagtcatga
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