Pseudomonas syringae pv. tomato DC3000: PSPTO_5070
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Entry
PSPTO_5070 CDS
T00118
Name
(GenBank) ATP-dependent RNA helicase rhlE, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_5070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_5070
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPTO_5070
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPTO_5070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAO58497
UniProt:
Q87V71
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All DBs
Position
5774194..5776083
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRD
KGKDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAPAAGGAARPANSGRPAGGAPRTGSGAG
APKRNGSGSSAPRSRDSQPRGRRPAREDQPLPREGQEPAVRAPRDGQPQPKIVHKESKID
RFPSAEQLDQLPARPRGEKPALLTRNRDS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tacacccagcctaccccagtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggtacgggtaaaaccggtggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgccaaccc
cgcgtactggtcctgaccccgactcgcgaactggccgcgcaagtgcacgagagcttcaag
ctctatgcccgcgacctcaagttcgtcagtgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtagacgtactggtggcctgccctggccgcctg
ctcgatctggccggtcaaggcagcgtcgatctgtcccacgtcgaaattctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtccatgacgtcaaaaaggtcctggcacgt
ttgccggccaagcgtcagaacctgctgttctcagcgaccttctccaatgacatcacgtcc
ctggccggcaagctgctgcacaacccggagcgtatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggttttccgtctggctgccaaccacaagcgttcgctgctg
gcgcatctgatcaccgtgggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggtgccaaccgtctcgccgagtacctggacaaacacggccttgcggcagtagcgatccac
ggcaacaagagccagaacgcacgtaccaaagcgctggccgatttcaaggccggtgatgtg
cgcatcatggtggctaccgatatcgccgcgcgcggtctggatatcgatcagttgccgcat
gtcgtcaacttcgagctgcctaacgtcgatgaagactacgtgcaccgtatcggtcgtacc
ggccgtgcaggtcgctccggcgaagccatctcgctggttgcaccggacgaagagaagctg
ctcaaaagtatcgagcgcatgaccaaacagaagattgccgacggtgatctaatgggcttc
gatatcactgcagttgaggccgagaagcctgaagtgcgtgagcgtcccgatgttcgcaac
tcgcgcggcgcacgtcctgcgcgtgccgatggcgacaagaacaacggtggtcgtcgcgac
aagggcaaggataaaggtaaggacaaacctgccgctgcggcagctacaggcgaacgccca
gcccggccgccacgcgaaaaaaagccccgtgagggcacgcctcgtagcgaacagcgtgca
gtgcagccttcaactccgcgtcaggcatcagatcgtgccccggacgagtttcgcgacgac
gaagtcgataacttcggcaatcgtgctgactacgtaagcccttatcagggtaaaggccaa
aaccgtggccgtcgccctgctgctgcgcctggcgctgcaccggcggccggcggcgctgca
cgtccggccaattcgggccgccctgcgggtggcgcgccacgtaccggttctggtgctggt
gcaccgaagcgcaatggttcgggttcttcggcgccgcgctcgcgcgacagccagccgcgc
ggtcgtcgcccggcacgcgaagatcaacccttgccgcgcgaaggccaggagcccgctgta
cgcgccccacgcgacggccagcctcagccaaagatcgtgcacaaagagtccaagatcgac
cgcttcccgtctgccgagcaactggaccagttgccagcacgcccacgtggtgaaaaaccg
gccctgctgacccgcaaccgcgacagctga
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