Pseudomonas syringae pv. tomato DC3000: PSPTO_5242
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Entry
PSPTO_5242 CDS
T00118
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_5242 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pst03021
]
PSPTO_5242 (rho)
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_5242 (rho)
Transcription machinery [BR:
pst03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSPTO_5242 (rho)
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSPTO_5242 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
Fungal_virus_P2_C
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AAO58668
UniProt:
Q87UQ4
LinkDB
All DBs
Position
complement(5961653..5962912)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLEMAEQAGIENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaattgctcgaaatggccgaacag
gctggcatcgaaaatatggcccgttcgcgtaagcaggacgtcattttttccctgcttaaa
cggcacgccaaaagtggcgaggaaatatccggtgatggcgtgctggagattctccaggac
ggcttcggtttcctgcgctctgcagacgcgtcctacctggccggcccggatgacatctac
gtctcccctagccagatccgccgtttcaacctgcgtaccggcgacaccatcgttggcaag
atccgtccacccaaggaaggtgagcgttatttcgctctgctcaaggtcgacacgatcaac
tacgatcgtcctgaaaacgccaagaacaagattctgttcgaaaacctgacgccgctgttc
ccgacgatccgcatgaagatggaagccggtaacggttccaccgaagaccttaccggtcgt
gtgatcgatctgtgtgcaccgatcggtaaaggtcagcgtggtctgatcgttgctccgcca
aaagcgggcaagaccatcatgctgcagaacatcgcgtcgaacatcacgcgtaacaacccg
gaagtgcatctgatcgttctgttgatcgacgagcgcccggaagaggtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacattcgacgaaccgccaacccgtcacgta
caggttgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaagacgtc
gttatcctgctcgactccatcacccgtctggcgcgcgcctataacaccgtcatcccgagc
tccggcaaggtactgaccggtggtgtcgacgctcacgcactcgaaaagccaaagcgtttc
ttcggtgctgcgcgaaacatcgaagaaggcggctcgctgactatcatcgccaccgcactg
gttgaaaccggttcgaagatggatgaagtcatctacgaagagttcaagggtacgggcaac
atggagctgcctctggatcgcaagatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgctccggcacacgccgcgaagagctgttgaccgctgatgacgagttgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgcggctatcgagttcctcatc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtccatgaaacgcaagtaa
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