Pseudomonas syringae pv. tomato DC3000: PSPTO_5409
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Entry
PSPTO_5409 CDS
T00118
Name
(GenBank) ATP-dependent DNA helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_5409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_5409
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_5409
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSPTO_5409
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPTO_5409
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSPTO_5409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
PorA
Motif
Other DBs
NCBI-ProteinID:
AAO58831
UniProt:
Q87U96
LinkDB
All DBs
Position
complement(6141738..6143666)
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AA seq
642 aa
AA seq
DB search
MHQRLEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVS
PLLALIQDQLAFLHRHGISAASIDSAQSRDDVADVMAKARSGELKILMISVERLKNERFR
NFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQALLLTATATPQVIIDM
QDKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRQRLVEWLHERQGQPTIVYVTLQKTAE
YIAAHLEQNGLPASAYHAGLPTDQRESIQKRFMGGSLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARVLEDLL
GARHDGQWEFLLGPLGDLGNIRQLPLKTLLVQLELRGLIASRYSYFAEYRFKFMLQPHDL
MARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYFQEKGWIELE
SKQTTEVYSLLRSDFDLQALSTELYEYFAHHEATEVARIHAMLEVFSSDQCLTHRLARYF
GDHNAPGLCGHCSVCHGQVAHLPEPPELEPLPSRDFQQLCGEFIHKHQDYTGQPPSAECL
TRFLCGISVPLFTRLKARATRGFAVLEDYPYAQVRAWVQGML
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagcgtcttgagcaggtttttggttacacgcagttccggccgggccaagaggct
gcaatcagtgccgtgctggccgggcgctcggctgcggcgatctttccgaccggctcaggc
aagtcgctatgttaccaattgcctgcgttgatgttgccgcatttaacgctggtggtttca
ccgttgctggcgctgattcaggatcagcttgcctttctgcatcggcatggcatttcggcg
gcgagcatcgattcggcgcagagccgggatgatgtcgcggacgtcatggccaaggcgcgc
tccggggaactgaaaatcctgatgatctcggtcgagcggctcaagaatgagcgcttccgt
aacttcatcgctcaggtgccgatttcccttttggttgtcgatgaagcgcactgtatctcg
gaatgggggcataactttcggcccgattacctgaaactgccggattaccagcgcgaattc
aacatccctcaagccctgctgctgacggcgactgcgacgccgcaagtcattatcgacatg
caggataaattcgccatcgcccctgaagatgtaatcaccaccggtttctaccgcgccaat
ctgcacctgtgggtcgagccggtcagcgggcgtgacaagaggcagcgcctggtcgagtgg
ctccatgagcgacaggggcagcccaccattgtctacgtgaccctgcaaaaaaccgccgaa
tacatcgccgcgcaccttgaacagaacggtctgcctgccagcgcctaccacgccgggctg
cctacggatcagcgcgaatccatccagaagcgcttcatgggcggcagcctcaattgcatc
gtggcgaccatcgcgttcgggatgggcatcgacaagagcgacattcgcaacgtggtgcat
ttcgacctgcctaaatccatcgagaactacagccaggaaatcggacgggcagggcgcgac
ggtgccgcttccgattgcctggtgctggccaatcgcgacagcctcaacgtattggaaaac
tttgtgtacggcgatacgccggagcgcgagggaattgcgcgcgtgctggaagacctgctc
ggcgcgcgccacgacgggcaatgggagtttctgctcgggccgttgggcgatcttggcaac
attcgccaactgccgctgaaaacattgctggtgcaactggagctgcgcgggctcattgcg
tcacgttactcctacttcgccgagtaccgtttcaagttcatgctccagccgcacgacctg
atggcgcgctttgaaggcgagcggcgcgaatttgttcaggcgctgatcgacacctccagc
cgggcgcggacctgggcgacggtcaacttcgacgcgatgtaccagcaatacggtgccgag
cgcgggcgagtggtcaaggcgctggattactttcaagagaagggctggatcgagcttgaa
agcaagcagacgaccgaggtgtacagcctgctgcgcagcgattttgacctgcaggccctg
agtaccgagctgtacgagtatttcgcccaccacgaggccacggaagtggcgcgcattcat
gcaatgcttgaagtgttctccagcgatcagtgcctgactcatcggctggcgcgctacttc
ggcgatcataatgcccctgggctttgcgggcattgttcggtctgccacggccaggtcgcc
cacctgcctgaaccgcccgagcttgaaccgctaccgagccgggactttcagcaactgtgt
ggcgagtttatccacaagcaccaggactacaccggccagccacccagcgcagagtgcctg
acccgttttttgtgcggcattagcgtaccgttgtttaccaggctcaaggcccgcgccacc
agaggttttgccgtgctcgaggattatccgtatgcgcaggtcagggcgtgggtgcagggg
atgctctga
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