KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_5424
Entry
PSPTO_5424        CDS       T00118                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Brite
KEGG Orthology (KO) [BR:pst00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pst03000]
    PSPTO_5424
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pst02044]
    PSPTO_5424
Transcription factors [BR:pst03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    PSPTO_5424
Secretion system [BR:pst02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   PSPTO_5424
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 HTH_30 AAA_5 AAA_2 GAF GAF_3 GAF_2 AAA_16 HTH_50 AAA_7
Other DBs
NCBI-ProteinID: AAO58846
UniProt: Q87U83
LinkDB
Position
complement(6165047..6166564)
AA seq 505 aa
MFTQMPQPLAYAQALLAQFASLARAVNGAQLLGDFVRSLAELSGCELSQLYLLDATHKCL
KMRAECLDGTLQPREAASLPVDYNGEQLLQFALCQNRVVCLGELSGSLHETSFLPTQSTP
WQSLLCVPVVNHQQAVEGLLLCASRRHVDLQGFADSLGQFGSFALGQLNLLQRLHKPADE
VRPAGITMPSVSGYGLIGKSASMRQTYTMISKVLHSPYTVLLRGETGTGKEVVARAIHDF
GPRRSQPFIVQNCAAFPEHLLESELFGYRKGAFTGADSDRTGLFEAANGGTLLLDEIGDI
PLPLQAKLLRVLQEGEIRPLGCNDTRKIDVRILAATHRDLSAMVSEGKFREDLYYRLAQF
PIELPALRNREGDILDLARHFVDKTCAFLQRSPLRWSDAALDLLSGYTFPGNVRELKGLV
ERAVLLCEGSELLVEHFSLRPEVVPEGSSLNLRERLEQVERSLLLDCLRKNDGNQTLSAR
ELGLPRRTLLYRLGRLNINLGDLNG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgttcactcagatgccgcagcctctggcatatgcccaagccttgttggcgcaattcgcc
agcttggcgcgggcggtgaatggtgcccaattgctgggtgattttgtacgtagcctcgct
gagctcagcggctgcgagctgtcgcagctttatctgctggacgccactcataagtgtttg
aagatgagagccgagtgcctggacggcacgctgcaaccgcgggaagcggcaagcctgccg
gtggattacaacggcgaacagctgttgcaatttgccctttgtcagaatcgtgtggtttgc
cttggcgaactgagcggcagcctgcacgaaaccagttttctgccgacgcaaagtacgccg
tggcagtcgctgctttgtgtcccggtcgtcaaccatcagcaagccgtcgaaggcttgttg
ttgtgcgcaagtcgccgacatgtcgatctgcagggttttgctgattctctcggtcagttc
ggctcgttcgcactgggtcaactcaacctgctgcaacgtttgcataagcctgcggatgag
gtacgaccggcagggatcactatgccaagcgtcagcggatacggtttgatcggaaaaagc
gcaagcatgcgtcagacctacacgatgatcagcaaggtgctgcacagcccgtacactgtg
ttgctgcggggagagacaggcaccggcaaagaagtcgttgcccgggcgattcacgacttc
ggtccgcgtcgctctcagcctttcattgttcagaactgtgcggcatttccagagcacctg
cttgaaagcgagcttttcggctatcgcaaaggagcctttacaggtgccgacagtgatcgt
accgggctgttcgaggctgccaatggcggcacactgttgctcgacgaaatcggcgacatt
cccctgccgctgcaagccaagctgctgcgcgtgctgcaagagggcgagattcgcccattg
ggttgcaacgatacgcgcaagatcgacgtgcgtattcttgcagcaacgcatcgtgacctg
tcggcgatggtcagcgaaggcaaattccgcgaggacttgtattaccgtcttgcgcaattt
cccattgagctgcctgccctgcgcaatcgagagggtgacattctcgacctggcgcggcac
ttcgtcgacaagacgtgtgcgttcttgcaacgtagccctttgcgctggtcggacgcagct
cttgatctcctgtccggttatacgtttcccggcaatgtgcgcgaactcaaaggcctggtc
gagcgtgctgtcctgctctgcgagggcagcgagttgcttgtggagcatttctctctgcgc
ccggaagttgtgcctgaaggcagcagcctcaatctgcgcgagcggctggagcaggtggag
cgcagcctgttgcttgattgcctgcgcaagaacgacggcaaccagactctttccgcgcgt
gaactcggcctgccgaggcgcacgctgctttaccgtttgggacgcctgaatatcaacctg
ggtgacttaaatggttag

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