Pseudomonas syringae pv. tomato DC3000: PSPTO_5516
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Entry
PSPTO_5516 CDS
T00118
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03420
Nucleotide excision repair
pst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSPTO_5516 (uvrD)
03430 Mismatch repair
PSPTO_5516 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_5516 (uvrD)
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSPTO_5516 (uvrD)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPTO_5516 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PSPTO_5516 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAO58935
UniProt:
Q87U01
LinkDB
All DBs
Position
6282042..6284225
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSVLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDD
QQRLVKRVMRELGLDEQLWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYE
AACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSDDFPDTEVIRLEQNYRSTASILKAANGLII
NNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLH
LMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHA
SLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNSVSRPFGGTP
KFNSGSLFNGTGIPETEFAMGQRVQHAVFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLVAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctgttcttcttaattccctcaacgatgcccaacgtcaggccgta
gccgcctcattgggtcgtcagttggtcctggccggtgctggctccggcaaaacccgagtg
ctggtgcatcgcatcgcctggctgatgcaggtcgagcaagcctccccgcattcggtcctg
tcggtgacgttcaccaacaaggcagctgccgagatgcgccaccgcatcgagcagctcatg
ggcatcagccctgctggcatgtgggtaggcactttccacggcctggcgcaccgcctgttg
cgggcgcactggcaggaagccgggctggtgcagaccttccagattctcgacagcgatgac
cagcaacgtctggtcaagcgcgtgatgcgcgagctgggtctggacgagcaactctggcct
gcgcgtcaggctcagtggttcatcaatggtcagaaagacgaaggcctgcgcccgaaacat
attcaggccagcggcgatctgttcctgaccaccatgaaaagcgtttacgaagcctacgag
gctgcctgccagcgtgcaggcgtcatcgacttctctgagttgctgctgcgcgcgctggac
ctgtggcgtgacaaccctggcttgctggcgcactaccagcgccgcttccgccacgtactg
gtggacgagtttcaagataccaacgccgtgcaatatgcctggctgcgcctgcttgctcag
ggtggcgacagcctgatggtggtcggcgacgacgatcagtccatctacggctggcgtggc
gcgaagatcgagaacatccatcagtattccgatgatttcccggacaccgaagtgatccgc
ctggagcagaactaccgctccacggcgagcatcctcaaagccgccaacggtttgatcatc
aataacagcgggcgtctgggcaaagagttgtggaccgacgtcggcgatggcgagctgatc
aatctgtatgccgccttcaacgaacacgacgaagcgcgttacgtggtcgagaccatcgag
agcgccctgaaaaccggcatctcacgcaacgacatcgccattctgtaccgttccaacgcc
cagtctagggtgctggaagaagccctgctgcgcgagcgtattccgtaccgcatctatggc
gggcagcgctttttcgagcgcgccgagatcaagaacgcgatggcctatatgcgcctgctg
gaaggtcgcggcaacgatgccgcgctggagcgggtgatcaacgttccggcacgcggcatc
ggcgagaaaaccgtcgaagcgattcgcgagcacgcgcggcatgccgacgtgtcgatgtgg
gaagccatgcgcctgctggtcgccaacaagggcctgactggccgcgctgccggcgcgctg
ggcgggtttatcgagctgatcgagaacctgtcggccaaggtcatggaaatgccgctgcac
ctgatgactcagacagtcatcgagcagtccgggctgattacctatcacgaacaggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgctcgggct
ttcgaaaatcacgagagcgacgaagaattgaccccgctggccgccttcctcggccatgct
tcgctggaagctggcgacactcaggcgcaagagcatgaagacagcattcagttgatgacg
ttgcacagcgccaagggcctggaattcccgcatgtgtttctggtgggcatggaagaaggt
ctgttcccgcacaagatgagcctggaagaaccgggccgtcttgaagaagagcggcgtctg
gcctatgtcggcatcacccgtgccatgaaacagctggtgatgacctacgccgagacacgc
cgcctgtacggcagcgaaacctacaacaaggtttcgcgtttcgtccgcgagattccgcct
gcgctgattcaggaagtccgtttgtccaacagcgtgagccgtcctttcggcggcactccg
aagttcaacagcggcagcttgttcaacggcaccggcattccggaaaccgagttcgccatg
ggccagcgcgtgcagcatgcggtgttcggcgaaggcgtgatcctcaacttcgaaggcgct
ggcgcccaggcacgcgtgcaggtcaacttcgccgaaggcagcaagtggctgatgatgggc
tatgcgaagctggtggcgttgtag
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