Paenibacillus stellifer: PSTEL_00225
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Entry
PSTEL_00225 CDS
T03335
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pste
Paenibacillus stellifer
Pathway
pste03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSTEL_00225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pste03400
]
PSTEL_00225
Enzymes [BR:
pste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSTEL_00225
DNA repair and recombination proteins [BR:
pste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSTEL_00225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AIQ61791
UniProt:
A0A089LJR6
LinkDB
All DBs
Position
45105..48629
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQGLIEAFTKDSDFQSVAKGVAAGMKEQLISGLSGSARQIMLAALHEETSRPMLIVTHN
MFSAQKIADDLQEALSPERVLLYPANELVAAEAAVSSPETVAQRIEVLNKCSQGFRGIVV
APYSGVRRLLPSPQVMANAQVTIQQDGTLELETFLNAMIEMGYERVERVENRGELSVRGG
ILDFYPMNTPLAYRVELFDEDVDSIRTFDPSDQRSIDKVRSVTITPAREIVAGARQLAAA
ADKASGLLERQLEKTTDRQAKIRLREEIGRELELLREGTYFPEMYKYIALLYPERCHLYD
YMEEDTLLILDEPARLLETAKQLERDESEWNLHLLQNGKTLPDLELSLDSDAVIYHRPFQ
SLFMSIFLRQVPHVQPQNILGFISRGMQDFHGQMNVLKSEMERWHKSGVKVIMLAGGEDR
IDRIRRVLDDYGIEEPTIMLGSLGSGFELPSIHLAVITEGELFSQKQRKARKNSKHMDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHIMYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVTNKVRSSVQDIADDLIKLYAERQSAPGYGFERDTQ
EQHEFEGMFPYDETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFASYPINIQVLSRFRSRKEQNETIKGVRQGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEYSQTLVREAVERELGRGGQVYYLYNRVQGIQEMASQ
IQMLVPEARVGIGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVTVLGEEDQSLKEGNTVIDLA
IDAYLPSEYIYDSVQKIEIYKKVAGVATFEDEAELEDELLDRFGELPESVVNLLSVARLK
LYGKLYGLDSMNRRGDEVLLSFHEDRIAMIDTPKLAKIGNGFERRVQFEKEAKAAIRIKA
KGLDDKELLELLERFLKEVKPAFKSKGELHNAVK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaaggtcttattgaggcttttaccaaagattccgattttcagtcggtagccaaa
ggcgtcgccgccggaatgaaagagcagctgatctcgggtctttcgggatcggcgaggcag
atcatgctcgctgctctgcatgaagagacttcccggccgatgctcatcgtgacgcataac
atgttctcggcgcaaaaaattgccgatgacttgcaggaagcgctttctcctgaacgggtt
ctgctgtatccggccaatgagctcgtcgcggccgaagcggcggtctcgagcccggagaca
gtggcccagcgtatcgaggtgctgaacaaatgctcgcagggattccggggcattgtggtc
gcgccttattcgggtgtgcggcgtctgctgccatcgccgcaagtcatggcgaatgcgcag
gttactattcaacaggacggaacgcttgagctggagacgttcctgaacgccatgattgaa
atgggctacgaacgggttgaacgggtggagaaccgcggagaactgagcgtccggggaggc
atcctcgatttctatccgatgaatacgccgctggcgtaccgggtcgagctctttgacgaa
gatgtcgattccatccggacgttcgatccatccgaccagcggtccatcgacaaggtcaga
agcgtgaccatcacgcctgccagggaaattgtcgccggagcgagacagcttgccgcagcg
gcggataaggcgtccggcttgctggaacgccagctggagaagacgaccgaccggcaggcc
aagatccggctgcgggaagagatcggacgcgagcttgagcttctgcgcgagggcacgtat
tttccggaaatgtataaatatattgccctgctctatccggaacgctgccatctctatgac
tacatggaggaggacaccctgcttatactggacgaaccggcgcgtctgctggagacggcg
aagcagcttgagcgcgacgaatcggaatggaacctgcatttgctgcagaacggcaagacg
ctcccggatctggagctgtcgctcgacagcgatgcggtgatctaccatcgtccgttccaa
agcctcttcatgtcgattttcctgcgtcaggttccgcatgtgcagccgcagaatattctg
ggcttcatcagccggggcatgcaggatttccacggacagatgaatgtgctgaaatcggag
atggagcgctggcacaaatctggcgtgaaggtcatcatgcttgcaggcggagaggaccgg
attgaccggatccgccgcgtgctggacgattacggcattgaggagccgaccattatgctt
ggaagtctgggttccggcttcgagcttccctcgattcacctggcggtcattaccgaggga
gagctgttctcgcagaagcagcgcaaggcccgcaaaaattcgaagcatatggataatgcg
gagcggatcaagagctataccgagctcaaaattggcgattatgtcgtgcaccagaatcac
ggcatcggcaaatacatgggcatcgggacattggaggtcagcggcattcaccgggattac
atgcacatcatgtacgccggtggagacaagctgtccgttccgatcgagcagatcgatctg
atccagaaatacgtaggctccgaggacaaggagccgaagatttacaagctcggcggcaat
gagtggacacgcgttaccaataaagtgcgttcctccgtgcaggatattgccgacgatctg
atcaagctgtacgccgaacgccagagcgcgccgggctacgggttcgagagggatacgcag
gagcagcatgaattcgagggaatgttcccgtatgatgagacccgggatcagctgcgggca
atcgaggaaatcaagaaggatatggagcagaaccgtccgatggaccgtctcctctgcggc
gatgtaggctacggcaagaccgaggtggcgatccgcgccgccttcaaggccgcgatcgag
ggcaagcaggtggcggtgctcgtaccgaccacgattttggcccagcagcattatgagacg
ttccgcgagcgcttcgcttcctatccgataaatattcaggtgctcagccggtttcgcagc
cggaaggaacagaacgagacgatcaagggcgtccggcagggaacggtggatattgtaatc
ggaacccatcgcctgctctcccaggatcttgtattcaaggatctgggcctgctgatcgtc
gacgaagagcagcggttcggcgtcacccataaggagaagctgaagaagctcaagaccaat
gtcgatgtcctgacgctgacggcaactccgattccccgcacgctgcatatgtcgatgctc
ggcgttcgcgacttgtcggttatcgagacgccgccggagaatcgcttccccgtgcagacc
tatgtcgtggaatacagccagacgctggtccgcgaggcggttgaacgggagcttggacgc
ggaggacaggtgtattacctgtataaccgtgtgcagggcatccaggagatggcctcccag
atccagatgctcgttccggaggcccgggttggcatcggtcacggccaaatgtccgagtcg
gagctggagaagacgattctcgacttcctggacggcgagtacgacgtgctggtcagcaca
agcattatcgagaccggggtcgatattccgaacgttaatacgctgattgtccatgatgcc
gataaaatgggcctgtcccagctgtaccagcttcggggacgggtcggccggtccaaccgg
atcgcctatgcctatttcacctaccagcgggataaggtgctgaccgaagtcgccgagaag
cgtctgcagtcgatcaaggagttcaccgagcttggctccggcttcaagatcgccatgcgc
gacctgtcgattcgcggcgccggcaatctgctaggcgcggagcagcacggcttcatcgcc
tcggtcggcttcgacctgtactcccagatgctggcggaagaaatccgcaaacggaaggtg
accgtcctcggcgaagaggatcagtcgcttaaggaaggcaataccgtcatcgatttggca
attgacgcctacctgccttccgagtatatttacgacagtgtgcagaagatcgagatctac
aagaaagttgccggcgttgcgaccttcgaagacgaggcggagctggaggacgagctgctt
gaccggttcggggagctgcctgagtcggtagtgaatctgttgtccgtcgcgcggcttaag
ctgtacggcaaactgtacggcctcgattccatgaaccggcgcggcgacgaggtgctgctg
agcttccatgaggaccggatcgcgatgatcgatacgcccaagcttgccaagattggcaat
ggttttgaaagacgtgtacaatttgaaaaggaagccaaagcggccatccggatcaaagcc
aaaggccttgacgacaaggagttgctcgaactgctcgagcgcttcctcaaggaagtcaag
cccgcttttaaatcgaagggagaattacacaatgcggtcaaataa
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