Paenibacillus stellifer: PSTEL_00980
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Entry
PSTEL_00980 CDS
T03335
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pste
Paenibacillus stellifer
Pathway
pste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTEL_00980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pste03021
]
PSTEL_00980
03019 Messenger RNA biogenesis [BR:
pste03019
]
PSTEL_00980
Transcription machinery [BR:
pste03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSTEL_00980
Messenger RNA biogenesis [BR:
pste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSTEL_00980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA
OB_RNB
AAA_22
Spore_III_AA
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIQ61915
UniProt:
A0A089LPC4
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All DBs
Position
176673..178034
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AA seq
453 aa
AA seq
DB search
MDLQISDLEEMKLTELYKLAKKYQIPYYGQMKKRELIFAILRAQAEQSGLMFMEGVLEIL
PEGYGFLRPINYLPSAEDIYISASQIRKFDLRTGDLVSGKCRTPKENERYFGLLQVNAVN
GENPASAAERLHFPALTPLYPQDKLSLEASPTHLSTRIMDLLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISNNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLQRALRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGS
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLTKEELDTIWSIRKSMNDSFDFVENFIKKLRDSKTNAEFLASFDVAGNKESG
SASASASAGGTSNSGASARRPVRPKTASVTTTT
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcaaatttccgatttggaagaaatgaagctgaccgagctgtataagctggcc
aagaagtaccagattccttattatgggcaaatgaagaagagagagctgatctttgccatt
ctgcgggcgcaggccgagcaaagcggtttgatgtttatggaaggcgtgctcgaaattttg
ccggaaggctatggattccttagaccgatcaattatctgccaagcgcggaggatatttat
atttcagcttcacagatccgcaaattcgatctccggacaggagacctggtatccggcaaa
tgccggacgcccaaagagaatgagcgttacttcgggctgcttcaggttaacgccgttaac
ggagagaaccccgcaagcgcggccgaacgtctgcatttcccggcgctgacaccgctttat
ccgcaggataagctttcgctggaggcttcacctacccacttgtccacccgcatcatggac
ctgctcgcgccggtcggcctgggccagcgcggattgatcgtagctccgcccaaagcgggc
aaaacgctcctgctgaaggagattgccaacagcatttccaacaacaaccccgagattgag
ctgttcgttctgctgattgatgaaagaccagaggaagttaccgatatgcagcgctccgtg
aagggcgaagtggtggcttccacattcgacgagcttcccgagaaccacatcaaggtggcg
gagcttgtgcttcagcgtgcgctccgtctcgttgagcacaagaaggatgtggtaatcctg
ctcgacagcatcacccgtttggcgcgggcgtacaatttggtcgttcccccgtcaggcaga
acgcttagcggcggtatcgatccggctgcgttccaccgtccgaagcgcttcttcggttcc
gcccggaacgtcgaggaaggcggcagtctgaccattctggcaacagcgcttattgataca
ggctcgagaatggatgatataatttatgaggaattcaaaggtacggggaatatggagctg
catctggaccgcaagctggcggaacgccgcattttcccggctatcgatattcgccgctcc
ggtacacggcgcgaggaagtgctgctaaccaaggaagaactggatacgatctggtcgatc
cgcaagagcatgaacgattcgttcgattttgtggagaattttatcaagaagctcagagac
agcaagaccaatgccgaattcttggcttctttcgatgtggcgggcaacaaggaatccggc
agcgcgagcgcctcggccagtgcaggaggaacctcgaacagcggagcttccgcgcggcgt
ccggttcgcccgaagacggcttctgttacaacgacgacctga
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