Paenibacillus stellifer: PSTEL_06010
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Entry
PSTEL_06010 CDS
T03335
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pste
Paenibacillus stellifer
Brite
KEGG Orthology (KO) [BR:
pste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSTEL_06010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pste03400
]
PSTEL_06010
Enzymes [BR:
pste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSTEL_06010
DNA repair and recombination proteins [BR:
pste03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSTEL_06010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIQ62723
UniProt:
A0A089LU17
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Position
complement(1255844..1256725)
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AA seq
293 aa
AA seq
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MPTVKGSITIEGEVVPITNPDKPLWPQQGITKMIYLEKLAALAPYLLRYLKGRLLTVIRY
PHGVEGMSFYQKNAPDPLPPYIHTTMHEGINYITLDGLPGLLWLGNSAALEFHPSLHAAG
STLPCEWMIDLDPSLDEEPRIMEAAALVGDVLKSLGIESVPKTSGATGVQIIVPIKPGVT
FDELRKLGLFVGRYVTEQHPSLFTLERLKKHRGDKIYFDYLQHYGGKTLAAPYTPRARPL
ATVSTPLTWEEVRSGASPEQFHLLNITDRLSQTGDLIALLPPQPVERVIKALP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcctacggtgaagggttccatcacaatcgagggggaggtcgtccccattacgaatccc
gacaaaccgctgtggccgcagcagggaatcaccaagatgatctatctggagaagctggcg
gctctggctccttacttgctgcgctatctgaagggccggctgctgaccgtcatccgttac
ccgcatggagttgagggcatgtctttttatcaaaagaacgcgcctgaccccctccctccc
tacatccataccaccatgcacgaggggatcaactatatcacacttgacggactccccggc
ttgctgtggctcggcaattccgctgccctcgaatttcatccctcactgcatgccgcaggc
agcacgctgccctgcgaatggatgatcgatctcgatccttcgcttgatgaagagccccgg
atcatggaagcggctgcccttgtcggcgatgttctcaagtccttagggatcgagtcggtc
ccgaagacctcgggtgcgacgggcgtgcagatcatcgttcccatcaagcctggcgtcacg
ttcgatgagctgcggaagctggggctgttcgtcggacgctatgtgacggagcagcatccc
tccctgttcactctggagcggctgaagaagcatcgcggggataaaatctacttcgactat
ctccagcattacggaggcaaaacacttgccgccccttatacgccccgcgcgcgcccgctg
gcgacggtatcgactccgctgacctgggaagaagtgcgcagcggggcttcgccggagcag
ttccatctgctcaatatcacggaccggctcagccagaccggcgacctgatcgccctgctg
cctccgcagccggtggagcgggtaatcaaggcgctgccttga
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