Paenibacillus stellifer: PSTEL_16315
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Entry
PSTEL_16315 CDS
T03335
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
pste
Paenibacillus stellifer
Pathway
pste02020
Two-component system
pste02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pste00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSTEL_16315
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSTEL_16315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pste03021
]
PSTEL_16315
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pste02035
]
PSTEL_16315
Transcription machinery [BR:
pste03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSTEL_16315
Bacterial motility proteins [BR:
pste02035
]
Flagellar system
Flagellar assembly proteins
Stator
PSTEL_16315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
PhyR_sigma-like
Sigma70_ECF
HTH_16
HTH_23
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AIQ64427
UniProt:
A0A089LU79
LinkDB
All DBs
Position
complement(3394514..3395302)
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AA seq
262 aa
AA seq
DB search
MNEHKASQLEHQELWEQWKEQGDPEAKKKLIEKYLHIVDYVSGRLAVGLPKNVSKDDLAS
NGVMGLIDAVEKFDYKRGLQFQTYASWRVRGAILDSLRQGDWVPRSVREKAKRIEDAYQQ
LEQKYLRSVSDEEMSQYLNVSEQEFQSMLQDVSVMTLCSLEDPIREEESETRMSVLVDDK
AKNPDRKVNEFYLRETLTKGIEKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLEKNRDLLMQND
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcataaagcttctcaattggagcatcaggaactctgggagcaatggaaggaa
cagggcgatcctgaagccaaaaaaaagctgatcgagaaatatctccacatcgtggattat
gtgtcggggcgactggccgtaggcctgcccaagaacgtatccaaggatgacttagcgagc
aatggcgttatgggactaattgatgcggtcgagaagttcgattacaaaagaggattgcag
ttccaaacctatgcctcctggcgtgttcgcggcgctattctcgattcgcttcgccaggga
gactgggtgccgcgctccgtacgggagaaagccaaaagaatagaagatgcttaccagcag
ctggaacagaaatacttgagatccgtaagcgatgaggaaatgagccagtacttgaatgtg
agcgagcaggaatttcagagcatgcttcaagatgtatccgttatgacgctgtgttccttg
gaggacccgattcgtgaagaggagtcggagacccgcatgtcggtattggtggacgacaag
gccaagaatcctgaccgtaaggtcaatgagttctatttacgggaaactttaactaaaggc
atagagaaactaaccgtgaaagaaaggaccgtcgtgtcccttttatattatgaagattta
tccctgagcgagattgctgaagtgatgtccctatctccgtcacgaatttctcagctgcat
tctaaggcaattctcaggcttcggggaacgcttgaaaagaaccgggatttgttgatgcaa
aacgactag
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