Phreatobacter stygius: E8M01_03675
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Entry
E8M01_03675 CDS
T05955
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pstg
Phreatobacter stygius
Pathway
pstg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pstg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E8M01_03675 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstg03021
]
E8M01_03675 (rpoD)
Transcription machinery [BR:
pstg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E8M01_03675 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sec8_N
Phage_DsbA
DUF7726
Motif
Other DBs
NCBI-ProteinID:
QCI63414
UniProt:
A0A4D7AQ95
LinkDB
All DBs
Position
complement(775803..777800)
Genome browser
AA seq
665 aa
AA seq
DB search
MATKATEKTEGADQETEAPDSPLLDLSDAGVRAMIKRAKKRGYVTIDEINAVMPAASFTS
DQIEDMNAMLSEMGINVVDNEDTAEEGEGEAPAADEADEADTEMTEASSRAVVKSERASE
PLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRD
ELNEGKIYLRDIIDLEATYAGPDAKNAPVVTEGEAPIAPEGDGEGLPPGVTEADLEDEDD
MENAVSLAAMEAELKPKVLEIFDMIADEYKKLRRLQDQNVENRLNDTKLSPSQERRAKKL
SEDLVLHVKSLSLNQARIDALVEQLYDINKRLVGYEGRLLRLAESYGVDRLSFIKEYQGS
ELDPNWIRRVASLGARGWKDFVASEKDTVKEIRAEIQALATETALEIGEFRKIVQMVQKG
EREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLG
MPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggcaaccgagaaaacggaaggcgcggatcaggagaccgaggctcccgac
agcccgctcctggacctctccgatgccggtgtccgtgcgatgatcaagcgcgccaagaag
cgcggctatgtgaccatcgacgagatcaatgcggtcatgcctgcggcctcgttcacctcg
gaccagatcgaagacatgaatgcgatgctcagtgaaatgggcatcaatgtcgtcgacaat
gaggatacggcggaagaaggcgagggtgaggcgccggcggccgacgaggccgacgaagcc
gataccgagatgaccgaagcctcgtcgcgggcggtggtcaaatccgaacgggcatccgag
ccgctcgaccgcaccgacgacccggtgcgcatgtatctgcgcgaaatgggctcggtggag
ctcttgtcgcgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgaggca
atgatcgcgggtctctgcgagagcccgctgaccttccaggccatcatcatctggcgcgac
gagctgaacgaaggaaaaatctaccttcgcgacatcatcgatctcgaagcgacctatgcc
ggcccggacgccaaaaatgcccccgtggtgaccgagggcgaggccccgatcgcgccggaa
ggtgacggcgagggcctgccgcccggcgtcaccgaggcggatctcgaagacgaagacgac
atggaaaatgccgtgtcgctggcggccatggaagccgagctgaagccgaaggtcctcgag
atcttcgacatgatcgccgacgagtacaagaagctgcgccggctgcaggaccagaatgtc
gagaaccggctgaacgacaccaagctgtcgccgagccaggaacgccgggccaagaagctc
tcggaagacctggtgctgcacgtcaagtcgctgtcgctgaaccaggcgcgcatcgatgcg
ctggtcgagcagctctacgacatcaacaagcgcctcgtcggttatgagggccggctcctg
cgcctggccgaaagctatggcgtcgaccgcctgtcgttcatcaaggaatatcagggttcc
gaactcgacccgaactggatccgccgcgtcgcctcgctcggcgcgcgcggctggaaggat
ttcgtcgcctccgaaaaggatacggtgaaggagatccgcgccgagattcaggcgttggcc
accgaaaccgcgctggagatcggcgaattccgcaagatcgtccagatggtgcagaagggc
gagcgcgaggcgcgccaggccaagaaggaaatggtcgaggccaacctgcgcctggtcatc
tcgatcgccaagaaatacaccaatcgcggcctgcagttcctggatctgatccaggagggc
aatatcggcctgatgaaggcggtcgataagttcgaatatcgccgcggctacaagttctcg
acctatgccacctggtggatccggcaggcgatcacccgttcgatcgccgaccaggcccgc
accatccgcatcccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgc
cagatgctgcacgagatcggccgcgagccgaccccggaagagctggccgagaagctcggc
atgcccttggaaaaggtgcgcaaggtcctgaagatcgccaaggagccgatcagcctggaa
acgccgatcggcgacgaggaggattcgcatctcggcgatttcatcgaggacaagaatgcc
atcctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccaccacgcgggttctg
gcctcgctgacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctggaagaggttggccagcagttctcggtgacccgcgagcgcatccgt
cagatcgaggccaaggcgctccgcaagctgaagcacccgtcgcggtcgcgcaagctccgg
tcgttcctcgacaactga
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