Phreatobacter stygius: E8M01_21805
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Entry
E8M01_21805 CDS
T05955
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pstg
Phreatobacter stygius
Pathway
pstg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E8M01_21805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstg03019
]
E8M01_21805
Enzymes [BR:
pstg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E8M01_21805
Messenger RNA biogenesis [BR:
pstg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E8M01_21805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Fe-ADH
SUa-2TM
HEM4
Motif
Other DBs
NCBI-ProteinID:
QCI66634
UniProt:
A0A4D7AYS1
LinkDB
All DBs
Position
complement(4641245..4642447)
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AA seq
400 aa
AA seq
DB search
MNTLNFASLGLAEPLLRSLNDAGFTKPTPIQAKAIPHLLEDHDLIGIAQTGTGKTAAFAL
PMLQHLAEETERVPSKGVRALILAPTRELALQIGENIAKLSKHTKLRHAVIFGGVGQNPQ
VQALARGLDLLVATPGRLIDLMNQGAVRLDTVTHLVLDEADRMLDMGFINDVMKIVNKLP
DQRQSMLFSATMPKEVAKLARTILWEPVRVEVTPEVVTVEAIEQHVYHVPTPDKRALLET
LLKDPDLARVVVFTRTKHGANRLAGQLVKAGVAADAIHGNKSQGARQRALAQFKAGAVRV
LVATDLFARGIDVAEITHVVNFDLPNEPESYVHRIGRTGRAGRTGIAFAFCDPSERSYLT
AIERLTRVSLTVASHSSQAQRRDPRAAAATPRPQPRRRAA
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
ttgaatactttgaattttgcgtcgctcggccttgccgagccgctcctgcgttccctcaat
gatgcaggcttcaccaagccgacgccgatccaggcgaaggccattcctcacctccttgaa
gaccatgatctgatcggcatcgctcagaccggcaccggcaagaccgcggctttcgcgctg
ccgatgcttcagcaccttgccgaagaaaccgaacgcgtgccctcgaagggcgtgcgcgcc
ctgatcctggcaccgacccgcgaactggccctgcagatcggcgagaacatcgccaagctg
tccaagcacaccaagctgcgccatgccgtgatcttcggcggcgtcggccagaacccgcag
gtccaggcgctcgcccgcggcctcgacctcctggttgccacccccggccgcctgatcgac
ctgatgaaccagggcgcggtgcgcctcgatacggtcacccatctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatcaatgacgtgatgaagatcgtcaacaagctgccg
gaccagcgccagtcgatgctgttttcggccaccatgccgaaagaagtggccaagctcgcc
cgcaccatcctgtgggagccggtgcgcgtcgaagtcaccccggaagtggtcacggtcgag
gcgatcgaacagcacgtctatcacgtgccgacgccggacaagcgagcgctcctggagacg
ctgctgaaggatcccgaccttgcccgcgtcgtggtgttcacccgtaccaagcacggcgcg
aaccggctggccggccagttggtcaaggccggcgttgccgccgacgccatccacggcaac
aagagccagggcgcgcgccagcgggcactcgcccagttcaaggccggcgccgtgcgcgtg
ctggtggcgaccgacctgttcgcccgcggcatcgacgtcgccgagatcacccatgtggtg
aatttcgacctgcccaatgaaccggaaagctatgtccaccgcatcggccgcaccggccgg
gccggccgcacgggcattgcattcgccttctgtgatcccagcgagcgcagctacctgacg
gccatcgaacggctgactcgtgtctcgctcaccgttgcttctcactcgtcccaggctcaa
cggcgcgatccccgcgccgctgccgccaccccccgtccgcagcccagacgtcgggctgcc
tga
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