Phreatobacter stygius: E8M01_22785
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Entry
E8M01_22785 CDS
T05955
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pstg
Phreatobacter stygius
Pathway
pstg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pstg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E8M01_22785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pstg03000
]
E8M01_22785
03400 DNA repair and recombination proteins [BR:
pstg03400
]
E8M01_22785
Enzymes [BR:
pstg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
E8M01_22785
Transcription factors [BR:
pstg03000
]
Prokaryotic type
Helix-turn-helix
AraC family
E8M01_22785
DNA repair and recombination proteins [BR:
pstg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
E8M01_22785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
QCI66818
UniProt:
A0A4D7B9E1
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All DBs
Position
4848292..4849740
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AA seq
482 aa
AA seq
DB search
MDLDHDACYRAISLRDARFDGRLFTAVKTTGIYCRPICPARTPRSENIIFFGTAAAAQEA
GFRPCLRCRPETAPDLGAWRGTSNSVSRALALIELGALDSGDVEALAGRLGLGERQLRRL
FRQHLGASPIAVAQTRRVLLAKQLIHETRLPMAEIAFASGFGSIRRFNETFLALFGRPPG
DLRRRAGPDISAGSQGEVSLRLRYQPPYDWPAMLAFLSARAIAGIEHVEGQTYWRSIALD
GVQGVLSVSPADGNALAATIRFPRLSALPAIIARLRRVFDLAADPRAITAHLAEDPALAP
LVSARPGLRVPGAWDGFELAMRAVLGQQITVAAAIRLAGRLVQAHGMPLAEPTGHLTHVF
PTPDVLAVADLRTLGMPASRAATLSAVAAAVVADPDLFGATRELDEAVDRLRAIKGVGQW
TAHYIALRQLREPDAFPAADIGLMRAMADQDGRRPAANELMARAERWRPWRAYAAQHLWA
SE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatctcgatcacgacgcttgctaccgggccatcagcctgcgcgatgcccgtttcgac
gggcggctgttcaccgccgtcaagaccaccggcatctactgccggccgatctgtcctgcg
cgcacgccgcgctccgagaacatcatcttttttggcaccgccgctgcggcgcaggaggct
ggctttcgcccttgcctgcgctgccggccggagacggcgccggatctcggtgcctggcgg
ggcacgtcgaacagtgtctcgcgtgcgctggccctgatcgagctgggcgcgctcgattcc
ggcgatgtcgaagccttggccggccggctcgggcttggcgaacggcagctccgccgcttg
ttccgccagcatctcggcgcctcgccgattgcggtcgcccagacccgccgggtgctgctg
gccaagcagctcattcatgagacgcgcctgcccatggccgagatcgcctttgcctcgggt
ttcggcagcattcgccgtttcaacgagaccttccttgcgttgttcggccggccacccggc
gatctccggcgccgcgccggacccgacatatccgcgggatctcaaggcgaggtcagcctg
cgtctccgctaccagccgccctatgactggccggccatgctggctttcctgtcggcccgc
gccattgccggcatcgagcatgtcgaaggccagacctactggcgcagcatcgcgctcgac
ggcgtgcaaggggtcctgtcggtcagcccggcggacggcaacgcgctcgccgcgaccatt
cgttttcccaggctgtcggccttgccggcgatcattgccaggctcaggcgcgttttcgat
ctggccgccgatccgcgggccatcaccgcccacctcgccgaagatccggcgctggcgccg
ctggtctcggcccggccggggctgcgcgtgccgggcgcctgggacggtttcgagctggcg
atgcgggcggtcctcgggcagcagatcacggtcgccgccgccatccggctcgccggccgg
ctggttcaggcccatggcatgccgctcgccgaaccgacgggccatttgacccatgtcttc
ccgacgcccgacgttctcgcggttgccgacctgaggaccctcggcatgcccgcgagccgt
gccgcgacgctctccgcggtcgccgccgcggtggttgccgaccccgacctgttcggcgca
acccgcgagctcgacgaggccgttgaccggctgcgtgccatcaagggtgtcggtcaatgg
acggcgcactacatcgcgcttcgccagttgcgcgagccggacgcctttccggccgccgat
atcggcctcatgcgcgccatggccgatcaggacggccggcggccggcggcaaacgaactg
atggcgcgggccgagcggtggcggccatggcgcgcctatgccgcccagcatctctgggca
tccgaatag
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