Peredibacter starrii: SOO65_00520
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Entry
SOO65_00520 CDS
T09598
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psti
Peredibacter starrii
Pathway
psti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOO65_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psti03021
]
SOO65_00520
03400 DNA repair and recombination proteins [BR:
psti03400
]
SOO65_00520
Enzymes [BR:
psti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOO65_00520
Transcription machinery [BR:
psti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOO65_00520
DNA repair and recombination proteins [BR:
psti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOO65_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
WPU65230
UniProt:
A0AAX4HPH3
LinkDB
All DBs
Position
complement(102695..103711)
Genome browser
AA seq
338 aa
AA seq
DB search
MNSFMSKNWAGMIRPAALEVDTEGLKSNYGKFTAKPLERGYGLTLGNSLRRVLLSSLQGA
GIVAVKVDGVDHEFGTINNIKEEVSEIILNLKEIRFKIIDKEEVTLVLEKNNEGAVKASD
IQENANVKVLNPEHVIANVSSGGSIRMELKVARGKGYVTALDNKEAFDLPVGWIYIDTLF
SPVHRVNYTVTNSRVGKRTDYDKLTLEVWTNAGIDPVDAVAISAKILRDQLSVFLNFEDK
DAPAEVKPTAAASTGGVANEALLKPVSELELSVRSANCLHNANIKYIYELVSKTEGEMLR
TKNFGRKSLNEIKEILSSMGLGLGMKVDNIMKQVQHAD
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaattcttttatgagtaaaaactgggccggtatgattcgtccggctgctttagaagta
gatacagaaggtcttaagtctaactacggtaagttcacagctaagccacttgagcgcggc
tacggtcttactcttggtaactctcttcgcagagttcttctatcatcactacaaggtgct
ggtattgttgctgttaaagttgacggtgttgaccatgagttcggcacaatcaataacatc
aaagaagaagtttctgagatcattcttaacctaaaagagatccgtttcaagatcatcgat
aaagaagaagtgactcttgttcttgagaagaacaatgaaggcgctgttaaagcttctgat
atccaagaaaatgcaaacgtaaaagttcttaacccagaacacgttatcgctaacgtttct
tcaggcggatcaatccgtatggagctaaaagttgctcgtggtaaaggttatgttactgct
ctagataacaaagaagcttttgatctacctgttggttggatctatatcgatactcttttc
tcaccagttcaccgtgtgaactacactgtgacaaactcacgtgttggtaagagaactgac
tacgataagctaactcttgaagtttggacaaatgctggtatcgatccggttgatgctgta
gctatttcagcaaaaatccttcgtgaccaactttctgttttccttaactttgaagataaa
gatgcacctgctgaagttaagcctacggctgcagcttctactggtggcgttgctaacgaa
gcacttcttaagccagtttctgagcttgagctatctgttcgttcagctaactgtttacat
aacgctaacattaaatatatctacgagctcgtttctaaaacagaaggcgaaatgctacgt
actaagaacttcggtcgtaaatctcttaacgaaattaaagagattctttcatcgatggga
cttggccttggcatgaaagtcgacaatatcatgaaacaagttcagcacgctgactaa
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