Peredibacter starrii: SOO65_02805
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Entry
SOO65_02805 CDS
T09598
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
psti
Peredibacter starrii
Pathway
psti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOO65_02805 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psti03019
]
SOO65_02805 (rny)
Messenger RNA biogenesis [BR:
psti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOO65_02805 (rny)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
dUTPase
KH_PNO1_2nd
Toprim_Crpt
KH_KhpA-B
MIOX
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
WPU65666
UniProt:
A0AAX4HQY9
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Position
544713..546266
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AA seq
517 aa
AA seq
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MNPMMMAVVGVIVGAIVAYLAVSMKNASAQKSKEGAAQDILAKAQADAEEVKKKAEEKAK
QIVRDERNRLEDEMEKKKKHLSDFERGLTKKEVALEQKTEQIQKDTDRVKAKETEIETRV
QKLDAEIKKNIEIQDDLANKLTQVAGLTKEQAKNELIAQVEEEARLDAAKKVKRIEEEAN
EEAEKRSKRIVGIAIQRFAGEYVAEQTISSVEIADDGVKGRLIGREGRNIRAFEQICGVD
LIIDDTPGVVTISSFNVVRKEISRMTIERLIADGRIHPAKIEEFYEKCKHEFESRLRELG
EKAQMEIGVHGIHPEILKLIGALNWRTSYTQNQYQHALETAFLAGNMAAELGMNVKQARR
AGLMHDIGKVLDASAEGSHAVIGADFAKKYGESPDIVHAIRAHHDDEKPESVLAHLVAAG
DALSGARPGARKALKESYVSRLSDIEKIVNGFEGVQRSYAISAGREIRVMVENEKVSDEQ
TIMLSRDIARKIEQEMSYPGTIKVSVIRETRAVGIAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaatgatgatggccgtagttggcgtgatcgttggtgcaatcgtagcttaccta
gcggtatctatgaagaatgcatcagctcagaagtccaaagagggcgcggcacaagatatc
ctggcaaaagctcaggcagacgctgaagaagttaagaagaaagctgaagaaaaagcgaaa
caaattgttcgtgatgaaagaaaccgacttgaagatgaaatggagaaaaagaaaaagcac
ctttctgatttcgagcgcggcctgactaaaaaagaagtggccctagagcagaagactgaa
caaattcaaaaagacactgaccgtgttaaagcaaaagaaactgaaatcgaaactcgcgtt
cagaaacttgatgctgaaatcaaaaagaacattgaaatccaggacgaccttgctaacaag
ctaactcaggttgctggtcttacaaaagaacaagctaaaaacgaacttatcgctcaagtt
gaagaagaagctcgtcttgatgctgctaagaaagttaagcgtattgaagaagaggccaac
gaagaagctgagaagagatctaagcgtatcgttggtatcgccatccagcgttttgctggt
gaatatgttgctgaacaaacaatctcttcagtggaaatcgctgatgatggtgtgaaaggt
cgtctaatcggtcgtgaaggtcgtaacatccgtgctttcgagcagatttgtggtgtggat
ctcattatcgatgatactcctggtgtcgtaacgatttcttcattcaacgttgttcgtaaa
gaaatctctcgtatgacaattgagcgtcttatcgccgatggtcgtattcaccctgctaaa
attgaagagttctacgaaaaatgtaaacacgagtttgaatctcgtctacgtgaacttggt
gagaaggcccagatggaaatcggtgttcacggtatccaccctgaaattctaaaactaatt
ggtgcccttaactggcgtacttcttatacacaaaaccaatatcagcacgctctagaaaca
gcattccttgctggtaacatggcggctgaacttggcatgaacgtaaaacaagctcgtcgt
gctggtcttatgcacgatatcggtaaagtacttgatgcttcggcagaaggttctcacgcg
gttatcggtgctgacttcgctaaaaaatacggagagtctccggatatcgttcacgctatc
cgcgctcaccacgatgatgaaaaaccagaatcagtacttgctcacttagtagctgctggt
gatgctctttcaggtgctcgtccaggcgctcgtaaggcccttaaagagtcttatgtatct
cgtctttctgatatcgagaaaattgttaacggtttcgaaggtgttcaacgttcttacgcc
atctctgctggtcgtgaaatccgcgttatggttgagaacgagaaagtatctgatgaacaa
acaattatgttgtctcgtgatatcgctcgtaagattgagcaggagatgtcatatcctggt
acaatcaaggtttctgtaatcagagaaacaagagcagtcggaatcgcgaagtaa
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