Peredibacter starrii: SOO65_03530
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Entry
SOO65_03530 CDS
T09598
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psti
Peredibacter starrii
Pathway
psti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOO65_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psti03019
]
SOO65_03530
Enzymes [BR:
psti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOO65_03530
Messenger RNA biogenesis [BR:
psti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOO65_03530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SUa-2TM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPU65811
UniProt:
A0AAX4HR80
LinkDB
All DBs
Position
complement(702271..703662)
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AA seq
463 aa
AA seq
DB search
MLKFKELALHEIILANLEVAGYETPTPIQAQSIPTLLEGHDLLGIAQTGTGKTAAFTLPM
LQKLQGRNFSLTPCEPRSLILAPTRELASQIKEQLDKYGRNLKVKNAVIFGGVGQAAQVA
ALRNGLDVLIATPGRLLDLMNQGHCKLNKVEIFVLDEADRMLDMGFIHDIKKIIAKLPEQ
KQTMLFSATMPNEIVGIANRILKNPTKVEVTPPSTTVERINQKVIFTQKAYKYQLLRKVL
VEEGVELTLVFTRTKHGANKIVDYLAHFNIQSAAIHGNKSQSARETALENFKTGKIKVLV
ATDIAARGIDVQGVSHVINYDLPVEAESYVHRIGRTARAGKDGDAISFCDETERDALARI
QKTIGKKLPTETFVGVAEQSVKMTQTDRKPYRDPRAKPKAKEPQKPQGQGQQQRPKPEQK
PRQEQRPRPEHRPASKGQGGPRREERKDNKEPAKVGFKFRKKR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaattcaaagaactcgctcttcacgaaattattctcgctaacttagaagttgcg
ggctacgaaactccaacccctattcaggcacagtcaattcctacacttttagagggccat
gaccttctaggaattgctcaaactggtacgggtaaaactgcggccttcacgcttccaatg
cttcagaagcttcaaggtcgtaatttcagcctcactccttgtgagcctcgttcattgatt
ctggcccctactcgcgagcttgcttctcaaatcaaagagcaacttgataagtacggacgt
aatcttaaagtaaaaaatgcagttatcttcggcggcgtaggacaagcagctcaagtagca
gctcttcgtaacggcctagatgttctgattgcgactccaggtcgtcttctagatctaatg
aaccaaggtcactgtaaactgaacaaagtagaaatcttcgttctagatgaagcggatcgc
atgcttgatatgggtttcatccacgatatcaaaaagatcatcgcaaaacttcctgagcaa
aaacaaaccatgcttttctcggcaactatgccgaatgaaatcgttggtatcgctaatcgc
attcttaaaaacccaacgaaggtggaagtaactcctccatcaaccacggttgaaagaatt
aatcaaaaagtgatcttcactcagaaggcctataagtatcaacttcttcgcaaggttctt
gttgaagaaggtgttgaactcactcttgttttcactcgtacaaaacacggtgcaaacaag
atcgtagattatcttgctcacttcaatattcaatcggccgcgattcacggaaataaatct
caatctgcccgtgaaacagctcttgaaaatttcaagacaggtaagattaaggtactagtt
gcgactgatattgccgctcgaggaattgacgtgcaaggcgtttctcacgtgattaactac
gaccttccagttgaagctgaaagttacgttcaccgtatcggccgaactgcccgtgcaggt
aaagatggcgatgccatttcattctgtgatgaaactgaaagagatgctttagcgcgtatc
caaaaaacaattggcaaaaaacttccaacagaaacgttcgttggagtagctgaacaatcg
gtaaagatgactcagactgatcgcaaaccataccgtgatccaagagctaaaccgaaggcc
aaagaacctcagaagcctcagggacaaggacaacagcaaaggccgaagccagagcaaaaa
ccacgtcaggaacaaagaccgcgcccagagcacagacctgcttctaaaggccaaggtggt
cctcgtcgtgaagaaagaaaagataataaagaaccagcgaaagttggatttaaatttcgc
aagaaaagataa
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