Peredibacter starrii: SOO65_12880
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Entry
SOO65_12880 CDS
T09598
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psti
Peredibacter starrii
Pathway
psti03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SOO65_12880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psti03400
]
SOO65_12880
Enzymes [BR:
psti01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SOO65_12880
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SOO65_12880
DNA repair and recombination proteins [BR:
psti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SOO65_12880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
C1_2
Motif
Other DBs
NCBI-ProteinID:
WPU63584
UniProt:
A0AAX4HK17
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All DBs
Position
2535658..2536461
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AA seq
267 aa
AA seq
DB search
MPELPEVETIRSQLSEYLPLKIDSVSTTPQLKQNILHTDLDLTGKTLVTIKRKGKMLDFI
FDDGSHLLSHLGMTGTWLIGETIKATKHTHLTLKGPNYTLAYDDPRRFGHMYYYSAEEAA
LKLAELGLDLADPEFDIEYLTNAIKRYPERALKVTLLDQKLFAGSGNYIANEICARAGIR
PTRKCKQIKKDEFPKILNAIKQVLEPALQSGGTTFQGGYRDSTGEYGQGVQHLVVFYQKT
CQLCKKTPVKKIILAQRGTYYCPKCQK
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacccgaagtcgaaaccatccgctcccagctctctgaatatcttcctctg
aagatagattcagtctctacgactccgcagttaaagcaaaacatccttcacacggatctc
gatctcaccggtaaaactcttgtgacgattaaacgcaaaggcaaaatgttggatttcatc
ttcgatgatggatcgcatctcctttcgcacctgggaatgaccggtacgtggctcatcggt
gaaacaatcaaggccaccaaacacacgcatttgacgttaaaaggcccgaattacaccctc
gcttacgatgaccctcgccgcttcggtcatatgtattattacagcgctgaagaagccgca
ttaaagcttgctgagttgggccttgatctagctgatcctgagttcgacatagaatatctt
acgaatgcgattaaacgttatccagaacgcgccctcaaggtaactctcctggatcagaaa
ctcttcgcgggatctgggaactatatcgccaacgaaatctgcgctcgcgcgggaattcgt
cctactcgcaaatgtaagcaaatcaaaaaagatgaattcccgaaaatcctcaacgccatt
aaacaagttttagaacccgcccttcaatcaggtggaaccactttccaaggtggctatcgt
gactcaacaggtgaatacggccagggtgttcagcacttagtggttttctatcagaagacc
tgtcagctctgtaagaagacgcccgtaaagaaaattatcttagctcaaagaggcacgtac
tactgtcctaaatgccagaagtaa
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