Peredibacter starrii: SOO65_14945
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Entry
SOO65_14945 CDS
T09598
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psti
Peredibacter starrii
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psti03032
]
SOO65_14945 (topA)
03400 DNA repair and recombination proteins [BR:
psti03400
]
SOO65_14945 (topA)
Enzymes [BR:
psti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SOO65_14945 (topA)
DNA replication proteins [BR:
psti03032
]
Prokaryotic type
DNA Topoisomerases
SOO65_14945 (topA)
DNA repair and recombination proteins [BR:
psti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SOO65_14945 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
eWH_GTF3C1
RP-C
Motif
Other DBs
NCBI-ProteinID:
WPU63991
UniProt:
A0AAX4HLB9
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Position
complement(2992340..2994904)
Genome browser
AA seq
854 aa
AA seq
DB search
MADKKYLVIVESPTKAKTIRKFLPSNYIVEASMGHIRDLPQSASDIPAALKKEEWAKLGV
NVDEDFDPLYIVPKDKKKIITDLKSKMKDCATIYLATDEDREGESISWHLLELLKPKVPV
KRMVFHEITKTAIQKALKETREVDEKLVRAQETRRILDRLYGYTLSPLIWKKIAYGLSAG
RVQSTGLRMIAERERERMRFKRSVYWDIKAQVHPAADKKALFDAKLTSIKGGRVAGGKDF
DGLTGKLVDDKKVVLLDEKKSKDLAKNIEKAEWKVTSVEEKTFNSKPAIPFITSTLQMEA
NRKLGMSSKDTMRTAQRLYEEGLITYMRTDSPNLSQEAINAARNMVVELYGKEYLNPEVR
QYAAKQKGAQEAHEAIRPAGAEFTHPDKTGMSGRELALYELIWKRTMATQMKEAEKASMT
IKIEAGDAEFSASGTRILFPGFLRVYVEGSDDPEAALEDKEVILPVLKKGDSLKAATITP
DMHETKPPARFTEASIVQALEKEGVGRPSTYASIIGTILDRGYVRKEGSALVPTFTGMAV
IQLLENHFEHLVDYSFTSEMEESLDKIAYGEEDWLKYLTKFYKGKGGLAKKVEEQDKKIK
PEESRTIHIMKDGKPMDIKVGRFGPYVVEKGEGKEEVHASIPEDIAPADLDPEQIKELLK
NQANGPTPIGTDPKTKEKIYCLVGRYGAYFQLGEVTEENPKPKRASLPKGKDPKTATIED
AIQALSLPRELGVHPETKKPILANNGRFGPYVMHDGNFRSLKKEDDLFTVDLKRAIELLS
EEKGASRRGGKVLKDFGLVAKLKKKVQVLDGKYGPYIKVGTKNITLPEDKRDPKVIEKMT
EAELASIVLAAAKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaaagtatctggttattgtggagtctcccacaaaagctaagaccattcgt
aaatttctcccaagtaattatattgttgaagcaagtatggggcacattcgtgacctgcct
caatcggcctcagatattccagctgctctaaaaaaagaagaatgggcgaagcttggcgtg
aatgttgatgaggatttcgaccctctatatattgttccaaaagataagaagaaaattatc
acagatctgaaatcgaagatgaaagactgtgccaccatctatcttgcgaccgatgaagac
cgcgaaggtgagtctatctcgtggcatttattagaattattgaagcctaaggtcccggta
aaacgaatggttttccatgaaattaccaaaactgcgatccaaaaggccctgaaagagacc
cgtgaagtggacgaaaaactggttcgtgcgcaggaaactcgccgaatccttgaccgtctt
tatggctacacgctctctcctttaatatggaagaaaatcgcctacggtctttcggccggg
cgcgtacaatcaactggtctgagaatgatcgcggaacgtgaacgtgagcgcatgcgcttt
aagcgttcagtttattgggacattaaggcccaggttcatccggccgctgataaaaaagct
ctctttgacgccaaacttacatctattaaaggtggacgcgttgccggtggtaaggacttt
gatggtctgactggtaaattggttgatgataaaaaggtcgttctactagacgagaaaaag
tcgaaagacctcgcgaaaaatatcgagaaagcagagtggaaagtaacttcggtagaagag
aaaactttcaattcaaaacctgcgatcccattcattacttcgactcttcaaatggaagcg
aaccgtaaacttggtatgtcgtcaaaagacaccatgagaacagctcagcgtctgtatgaa
gaaggtctcattacttatatgagaactgactcaccaaacctttctcaggaagcaatcaat
gctgcccgaaacatggtggttgagctttatggaaaagagtatctgaatccagaagttcgt
cagtatgcggccaaacaaaaaggtgctcaagaggcccacgaagccatccgtcctgcgggt
gctgaattcactcatccggacaaaactggcatgagcggtcgcgagcttgctctttatgaa
ctcatttggaaacgtacgatggccactcagatgaaagaagctgagaaggcatcgatgacg
atcaaaattgaggccggagacgcagagttctcagcttcaggaacacgtattttattccct
ggtttccttcgcgtttacgtagaaggatcggatgatccggaagcagctctcgaggataaa
gaagttatccttcctgtcttgaaaaaaggcgactcccttaaagctgctacgatcactcct
gatatgcacgagacaaaaccacctgcgcgtttcacagaagcttccatcgttcaagctctc
gagaaagagggtgtaggtcgtccgtctacatacgcttcgattatcggaacaattctggat
cgtggttatgttcgtaaggaaggctcggcactggttcctacatttactggtatggccgtg
attcagcttcttgaaaatcacttcgaacatttagtggattattcattcacatcagagatg
gaagagtctctggataagatcgcttacggtgaagaagactggttaaagtatttaactaag
ttctacaaaggcaagggcggtcttgcgaagaaagttgaagagcaagataagaaaattaaa
ccagaagaatctcgtactattcatattatgaaagacgggaaaccgatggacattaaagta
ggtcgatttggaccttacgttgtggaaaaaggtgaaggaaaggaagaagttcacgcttca
attccggaagacatcgctccagcggatcttgatcctgaacagatcaaagaacttttgaag
aatcaggccaatggcccgactccgattggtacagatccgaagacaaaagagaagatctac
tgtctcgttggccgttatggtgcttacttccaattgggagaagtgacggaagaaaatcca
aagccgaagcgtgcttcgttaccgaaaggtaaggacccgaaaacggcgacgattgaagac
gctattcaggcgctttcacttcctcgtgagctaggtgttcacccagagacgaaaaagcca
attctcgccaataacggccgttttgggccatatgttatgcacgacgggaacttccgctct
ttgaagaaggaagatgaccttttcaccgtggacctaaaacgcgcgattgagctactttct
gaagaaaaaggggcgagccgccgtggtggtaaagtgctgaaagacttcggtctggtggcg
aaattgaagaagaaagttcaggttctggacggaaaatacgggccatatattaaagtcggt
acgaagaacatcactctgcctgaggacaaacgtgatcctaaggtgattgagaagatgact
gaggccgagttggcgagtattgttcttgctgcggcgaagaagtag
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