Peredibacter starrii: SOO65_18075
Help
Entry
SOO65_18075 CDS
T09598
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psti
Peredibacter starrii
Pathway
psti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOO65_18075 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psti03021
]
SOO65_18075 (rho)
03019 Messenger RNA biogenesis [BR:
psti03019
]
SOO65_18075 (rho)
Transcription machinery [BR:
psti03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SOO65_18075 (rho)
Messenger RNA biogenesis [BR:
psti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SOO65_18075 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
Spore_III_AA
AAA
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WPU64604
UniProt:
A0AAX4HMU7
LinkDB
All DBs
Position
complement(3613270..3614844)
Genome browser
AA seq
524 aa
AA seq
DB search
MTTKKPRKSVQDDQTETVSAEAETTPEVEAKEAAPAREPREQREPREQRPPRQDRGDRDQ
GPRGRHPQNRGGDRGEHRGEPRQRFQDDQPRHSSPTEQTNRVPSNPGDRMHLSALREKDI
EELTRMAEEAQIENAAGLKKHELIFSLLTKKSKDNEEIFGDGVLEILPDGFGFLRSPSYN
YLPGADDIYVSPSQIRRFGLRTGDTIEGQIRTPKEGERYFALLKVNHINFRDPEAHRSTV
LFDNLTPLYPNKKIQLESKPTNYSTRVIDLFVPQGFGQRCLIVAPPKAGKTMLMQDIANS
ISDNHPEAKLIVLLIDERPEEVTDMKRNVRAEVVSSTFDEPATRHVQVAEMVIEKAKRLV
EAKQHVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAARNIENGGSLT
IIATALIDTGSRMDEVIFEEFKGTGNSEIQLDRKLMEKRVFPCLDINKSSTRKEDLLMAD
KDLQRVFVLRRVLNPMNTMDSMEFILERMRDTKTNIAFLDKMNG
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaaaaaaccaagaaaatccgttcaagatgatcaaaccgaaaccgtgagtgct
gaagctgaaacaactccagaagttgaagcaaaagaagcagcaccagctcgcgagccacgt
gaacaacgtgaaccgcgtgagcagagaccaccacgccaagatcgtggtgatcgtgatcaa
ggccctcgtggtcgtcatccgcaaaatcgcggtggagatcgtggagaacaccgtggcgaa
cctcgtcaacgtttccaagacgatcagccaagacattcatcaccaactgaacaaacaaat
agagttccatctaatcctggagacagaatgcatttaagtgcactacgtgaaaaagacatc
gaagaactaaccagaatggcggaagaggcccagattgaaaacgcggccggtttaaagaag
cacgaacttatcttctcgctcctcactaaaaaatcaaaagataatgaagagatcttcggt
gatggtgttctagaaattcttccagatggtttcggtttccttcgttctccatcttataac
tacctaccaggtgcggatgatatctacgtttctccttctcaaatccgtcgtttcggtctt
cgtactggtgacacaattgaaggtcagatccgtactccgaaagaaggcgagcgttacttc
gcacttctaaaagtaaatcacattaacttccgtgatccggaagctcaccgttcaacggtt
ctattcgataacttaactccgctttatccgaataagaaaatccaacttgaatcaaaacca
actaactattcaactcgtgtgatcgatcttttcgttccacaaggttttggtcagcgttgt
ttgatcgttgctcctcctaaagctggtaaaaccatgcttatgcaggacattgctaactca
atctctgataatcatccggaagcaaaacttatcgttcttctgatcgatgaacgtccggaa
gaagtaacagatatgaagcgtaacgtacgcgcagaagtagtttcttcgacattcgatgaa
cctgctactcgtcacgtacaggttgctgaaatggtaattgaaaaagctaaacgtctggtt
gaagctaaacaacacgtagtgatccttctggattcaatcactcgtcttgctcgtgcttac
aacacagttgttccaccgtctggtaagatcctttcgggtggtgtggattcgaacgccctt
cacaagcctaagcgtttcttcggtgccgctcgtaacatcgagaatggtggatcccttaca
atcatcgcaactgcgcttatcgatactggttcgcgtatggatgaagttatcttcgaggaa
ttcaaaggtacaggtaactcggaaatccagcttgaccgtaaacttatggagaagcgtgta
ttcccgtgtctggatatcaacaaatcgtctactcgtaaggaagatctccttatggccgac
aaagatcttcagagagtgttcgtccttcgtcgagtacttaaccctatgaatactatggat
tctatggaatttatccttgaacgtatgagagatacgaagaccaacatcgctttcttggat
aaaatgaacggatga
DBGET
integrated database retrieval system
