Peredibacter starrii: SOO65_18270
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Entry
SOO65_18270 CDS
T09598
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psti
Peredibacter starrii
Pathway
psti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOO65_18270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psti03019
]
SOO65_18270
03009 Ribosome biogenesis [BR:
psti03009
]
SOO65_18270
Enzymes [BR:
psti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOO65_18270
Messenger RNA biogenesis [BR:
psti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOO65_18270
Ribosome biogenesis [BR:
psti03009
]
Prokaryotic type
rRNA helicases
SOO65_18270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Flavi_DEAD
Metal_hydrol
Motif
Other DBs
NCBI-ProteinID:
WPU64643
UniProt:
A0AAX4HN69
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All DBs
Position
complement(3652962..3654674)
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AA seq
570 aa
AA seq
DB search
MSFNDLGLKESSLKAIAKMGFENPSEIQTQAIPVLMQGDVDFIGQAQTGSGKTAAFVLPL
LEKLDFKSPALQAIILAPTRELANQINEEIQKLSAFEPIRSMSVYGGTSVGLQIKDFKSK
KPQVVAGTPGRVMDLIDRGVLKFDATKFVILDEADEMLDMGFFDDVTAIIDAIPEKRIWM
FSATLPGPISDLVNREFSNPVTVRVTKKVLTADTVEQKAVVVRRENGIEALCRYMDFSDD
MYAIIFTRTKIGAKELTDELNARGYPTDALHGDMDQAARDMTMKKFKEKKINLLVCTDVA
ARGIDVNNLTHVINFGLPQDNESYVHRIGRTGRGGSKGVSLSIIEPNEQGRVGQIERLTK
AKIERVFLPKVNEIREKILEKSLKRFTDHIESFHDEEVLHYDAFKAKFDELDKEEIIKGI
YGFMFENTLKRYQKAQEIDVAPRGQGGERQQGARVQTGMQRFFINLGTMDGANAGELLKF
VSSASGVAGRNIGRIETKEKFAFLEASSEFTDAIMNIKGEMFGNRRVSIELATAPAGGGG
GRGFGGGGYRGGNRGGDRGGRSGGYRGNRY
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttaatgatctaggactcaaagagtcttcactcaaagctatcgccaagatggga
ttcgaaaatccatctgaaatccaaactcaagcgatccctgtgctgatgcaaggggatgtt
gattttatcggtcaagcgcaaacaggttctggtaaaacagctgctttcgttcttccacta
cttgaaaaattagatttcaaatcgccggcacttcaggccatcattcttgctccaactcgt
gagcttgctaaccaaatcaacgaagagatccagaagctttcggcattcgaaccaatccgt
tcaatgtctgtttacggcggtacttctgttggtcttcaaattaaagacttcaaatcgaaa
aaacctcaggttgttgctggtactccaggacgcgtgatggatcttatcgatcgtggtgtt
cttaaatttgatgccactaaattcgtaattctagatgaagcagatgaaatgcttgatatg
ggtttctttgatgacgttacagcgatcatcgatgcaatccctgaaaagagaatctggatg
ttctctgcaactcttccagggccaatctctgatctagttaaccgtgagttctcaaacccg
gtaactgttcgtgtaacgaagaaagttcttactgctgatacagtagaacaaaaagcagtt
gtggttcgtcgtgaaaacggtattgaagcactttgccgttatatggatttctctgatgat
atgtacgcgatcatcttcacacgtacgaagatcggtgcaaaagaacttactgatgaatta
aatgctcgcggttatccaactgacgctcttcacggagatatggatcaggccgctcgtgat
atgacgatgaaaaagttcaaagagaagaaaattaaccttctagtttgtactgacgttgct
gctcgcggtatcgatgtgaacaaccttactcacgtaattaacttcggtcttcctcaagac
aacgaatcatacgttcaccgtattggtcgtacaggtcgtggcggttcgaaaggtgtttca
ctttcaatcatcgagccaaatgagcaaggtcgcgtaggtcagatcgagcgtcttacaaaa
gcaaaaattgaacgcgtattccttccgaaagtgaatgaaattcgcgagaaaattcttgag
aaatcattgaagcgtttcacagaccatattgaatctttccatgatgaagaagttcttcat
tacgatgctttcaaggccaagttcgatgagcttgataaagaagagatcatcaagggtatc
tacggtttcatgttcgaaaacacattgaagcgttaccagaaggcacaggaaattgatgta
gctccacgcggtcagggtggcgagcgccagcaaggtgcccgtgtacaaactggtatgcag
cgtttcttcatcaaccttggaacaatggatggagcaaatgcaggcgagcttcttaagttc
gtttcaagtgcatcaggcgttgctggccgtaacatcggtcgtattgaaactaaagagaag
tttgctttccttgaagcttcttcggaattcacagacgctatcatgaacatcaaaggtgag
atgttcggtaatcgtcgcgtttctatcgaacttgctactgcacctgcgggtggaggcggc
ggtcgtggtttcggcggcggcggatatcgtgggggcaaccgtgggggcgatcgcggcggt
cgttctggcggataccgcgggaaccgttactaa
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